KEGG   Staphylococcus capitis subsp. capitis: AYP1020_0559
Entry
AYP1020_0559      CDS       T03970                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
scap  Staphylococcus capitis subsp. capitis
Brite
KEGG Orthology (KO) [BR:scap00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:scap03032]
    AYP1020_0559 (topA)
   03400 DNA repair and recombination proteins [BR:scap03400]
    AYP1020_0559 (topA)
Enzymes [BR:scap01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     AYP1020_0559 (topA)
DNA replication proteins [BR:scap03032]
 Prokaryotic type
  DNA Topoisomerases
   AYP1020_0559 (topA)
DNA repair and recombination proteins [BR:scap03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      AYP1020_0559 (topA)
SSDB
Motif
Pfam: Topoisom_bac zf-C4_Topoisom Toprim Toprim_4 RNA_POL_M_15KD Toprim_2 Porphyrn_cat_1 Cys_rich_CPXG
Other DBs
NCBI-ProteinID: AKL91706
LinkDB
Position
555734..557803
AA seq 689 aa
MADNLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGK
GPVVKDLKKYAKKAKKVFLASDPDREGEAIAWHLSKILELEDSKENRVVFNEITKDAVKD
SFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDREN
EIRNFKPEEYWTIEGEFRYKKSKFNAKFLHYKNKPYKLNTKEDVEKITTALDGDQFEITN
VNKKEKTRNPANPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKRQGTIGLITYMR
TDSTRISDSAKSEAHNYITDKYGKEYVSKRKATGKQGDQDAHEAIRPTSTLRTPDEMKPY
LTRDQHRLYKLIWERFVASQMAPAILDTIALDVTQNDIKFRANGQTIKFKGFMTLYVEAK
DDKDNDKENKLPKLEEGDKVTATQIEPAQHFTQPPPRYTEARLVKTLEELKIGRPSTYAP
TIDTIQKRNYVKLESKRFVPTELGEIVYEQVQEYFPEIIDVEFTVNMETLLDKIAEGDTN
WRKVVGDFYNSFKQDVERAEEEMEKIEIKDEPAGEDCEVCGSPMVIKMGRYGKFMACSNF
PDCRNTKAIVKSIGVTCPKCNEGEVVERKSKKNRIFYGCSQYPDCDFISWDKPVGRECPK
CNHYLVDKKKGRSSQVVCSNCDYKEEVQK
NT seq 2070 nt   +upstreamnt  +downstreamnt
ttggcagataatttagtcatagttgagtcgcctgcaaaagctaaaaccattgaaaaatat
ttaggaaaaagatacaaagttatcgcttcaatgggacacgtacgtgacttgcctagaagt
caaatgggtgtcgatactgaagataactatgaaccaaaatatattacaattcgcggtaaa
ggtccggttgttaaagatttaaagaaatatgctaaaaaagctaaaaaagtttttctcgct
agtgaccccgaccgtgaaggtgaagcgattgcctggcatttatcaaaaattttagaacta
gaagactcaaaagaaaacagagtagtattcaatgaaattacaaaagatgcggtaaaagat
agtttcaaacaccctagaggtattgaaatggatttagttgatgctcagcaagcacgtcgt
attctagatagactcgtgggttataatatctctcctgtattatggaagaaagttaaaaaa
ggtttatctgcaggacgtgttcagtcagtagctcttcgtttagttatcgaccgagaaaat
gaaatacgtaatttcaaaccagaagaatattggactattgaaggggaatttagatataaa
aagtctaaatttaatgctaagttcctccattataaaaataaaccttacaaattaaataca
aaagaagacgttgagaaaattacaacagctcttgatggagatcaatttgaaattacgaat
gtaaataagaaagaaaaaacacgtaatccagctaacccatttactacttcaacccttcaa
caagaagctgcacgtaagttaaacttcaaagctcgtaaaactatgatgttagcgcaacaa
ctatatgaaggtattgatttaaaacgtcaaggtactatcggtttgattacttacatgcgt
acagattctacacgtatatcagactctgcaaagtcagaagctcataactatattactgat
aaatatggtaaagaatatgtgtctaaacgtaaggcaaccggtaaacaaggtgaccaagat
gcccatgaagcgattagacctacaagtactttaagaactccagatgaaatgaaaccttat
ttaactagagatcaacatcgtctgtataaattaatttgggaacgttttgtggcaagccaa
atggctccagcaattttggatactattgcactcgatgttactcaaaatgatattaaattt
agagcaaatggtcagactataaaattcaaaggtttcatgacactatatgttgaagctaaa
gatgataaagacaatgataaagaaaacaaacttcctaaattagaggaaggcgataaagtt
acagcaactcaaattgaacctgcacaacactttactcaaccacctccacgttatacagaa
gcacgtttagttaagacgctagaggaacttaaaataggaagaccttcaacttatgctccg
actatagatactattcaaaagcgtaactacgttaaattagaaagtaaacgattcgtacca
acagaacttggcgaaattgtttatgaacaagtccaagagtacttcccagaaattattgat
gtagagtttactgttaacatggaaactttattagataaaatagctgagggagatacgaat
tggcgtaaagtagttggtgatttttataatagtttcaagcaagatgttgaacgtgctgaa
gaggaaatggaaaaaatagaaattaaagacgaaccagctggagaagattgtgaagtctgt
ggttcacctatggttattaaaatgggaagatatggtaagtttatggcttgttctaatttc
cctgattgtcgaaatactaaagctatagttaaatctatcggagtaacatgtcctaaatgt
aatgagggtgaagtagttgaacggaaatccaagaagaatagaatattttacggatgctct
caataccctgattgtgacttcatttcttgggataaaccagtaggaagagaatgtcctaaa
tgtaaccactacttagtagataagaaaaaaggtagaagtagccaggtcgtttgttctaac
tgtgattacaaggaagaagttcaaaaatag

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