KEGG   Streptomyces scabiei: SCAB_78681Help
Entry
SCAB_78681        CDS       T01187                                 

Definition
(GenBank) putative DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
scb  Streptomyces scabiei
Pathway
scb03030  DNA replication
scb03410  Base excision repair
scb03420  Nucleotide excision repair
scb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:scb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SCAB_78681
   03410 Base excision repair
    SCAB_78681
   03420 Nucleotide excision repair
    SCAB_78681
   03430 Mismatch repair
    SCAB_78681
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:scb03032]
    SCAB_78681
   03400 DNA repair and recombination proteins [BR:scb03400]
    SCAB_78681
Enzymes [BR:scb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SCAB_78681
    6.5.1.6  DNA ligase (ATP or NAD+)
     SCAB_78681
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SCAB_78681
DNA replication proteins [BR:scb03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    SCAB_78681
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     SCAB_78681
DNA repair and recombination proteins [BR:scb03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SCAB_78681
   NER (nucleotide excision repair)
    Other NER factors
     SCAB_78681
   MMR (mismatch exicision repair)
    Other MMR factors
     SCAB_78681
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase mRNA_cap_enzyme NifU
Motif
Other DBs
NCBI-ProteinID: CBG74832
UniProt: C9ZCP3
LinkDB All DBs
Position
complement(8688237..8689775)
Genome map
AA seq 512 aa AA seqDB search
MLFARLARVSQEIAATSARSRKTALLADLFRDAGEEDVPIVIPYLAGRLPQGRLGIGWKV
LDQRIPPAGTATLTVREVDARLTAIGAVTGTGSQTERRRLVGALLAAATEDEQRYLVGLL
TGEVRQGALDALAVEGLAGATGAPAADVRRAVMLAGSLQTVARALLAEGPRALEGFRLTV
GRPVQPMLAHSAPSVAEAVAKLGVCAVEEKLDGIRVQLHRDGGDVRLYTRTLDDITDRLP
ELTSAALGLRGERFILDGEVIAFDGNGRPRSFQETAGRVGSRLDVATAARQVPVSPVFFD
ALSVDGQDLLDLPFTERHAVLARLVPEPMRVRRTLVTGPDDLPEAERFLTDTLERGHEGV
VLKALDAPYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGRLSNLHLGARTADGAFA
MLGKTFKGMTDALLAWQTERLTELAVEEHRWGVTVRPELVVEIAYDGLQRSTRYPAGVTL
RFARVIRYREDKTPGEADTVEALLSAHPEVTR
NT seq 1539 nt NT seq  +upstreamnt  +downstreamnt
atgctcttcgcccggctcgcccgcgtgtcgcaagagatcgccgccacctcggcccggtcc
cgcaagaccgccctgctcgccgacctcttccgggacgccggggaggaggacgtgccgatc
gtcatcccgtacctcgcgggccgcctgccccagggccgcctgggcatcggctggaaggtc
ctcgaccagcggatccccccggccggcaccgcgaccctcaccgtccgcgaggtcgacgcc
cgcctgacggcgatcggcgccgtcacgggtacgggctcgcagaccgaacgcagacggctg
gtgggcgcgctgctcgcggcggccaccgaggacgaacagcggtacctcgtcggcctgctc
accggcgaggtccgccagggcgccctggacgcgctggcggtggagggcctggccggggcc
accggggcgcccgccgccgacgtacgccgggcggtgatgctcgccggctcgctgcagacc
gtggcgcgggcgctgctcgccgagggcccgcgggccctcgaagggttccggctcaccgtc
gggcgccccgtccagccgatgctcgcccacagcgccccctccgtcgccgaggccgtggcg
aagctcggcgtgtgcgcggtcgaggagaagctggacggcatccgcgtccagctccaccgc
gacggcggcgacgtacgcctgtacacccgcaccctggacgacatcaccgaccggctgccc
gaactcacctccgccgcactggggttgcggggcgaacggttcatcctggacggggaggtg
atcgcgttcgacgggaacgggcggccccgctccttccaggagacggcgggccgggtgggc
tcacggctggacgtggcgacggcggcccgccaggtgcccgtctcccctgtcttcttcgac
gcgctctccgttgacgggcaggatctcctggacctcccgttcaccgaacgccacgccgtc
ctcgcccgactcgtcccggagcccatgcgggtccgccgcaccctcgtgacgggccccgac
gacctgcccgaggcggagcggttcctcaccgacaccctggaacgcggccacgagggtgtc
gtactgaaggcgctggacgccccctacagcgcgggccggcgcggggcgtcctggctgaag
gtcaagccggtgcacaccctcgatctggtggtcctggccgccgagtggggccacggccgc
cgcacgggcaggctgtccaacctccatctcggcgcccgcaccgccgacggcgccttcgcc
atgctcggcaagaccttcaagggcatgaccgacgcgctgctggcctggcagaccgaacgg
ctgacggagctggccgtggaggagcaccgctggggcgtgaccgtacgccccgaacttgtc
gtcgagatcgcctacgacggactgcagcgctccacccgctacccggccggtgtcaccctc
cgcttcgcccgcgtgatccgctaccgcgaggacaagaccccgggggaagccgatacggtc
gaggccctgctgtccgcacaccccgaggtgacgcgttga

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