Sphingobium chlorophenolicum: Sphch_0027
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Entry
Sphch_0027 CDS
T01522
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sch
Sphingobium chlorophenolicum
Pathway
sch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sphch_0027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sch03019
]
Sphch_0027
03009 Ribosome biogenesis [BR:
sch03009
]
Sphch_0027
Enzymes [BR:
sch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Sphch_0027
Messenger RNA biogenesis [BR:
sch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sphch_0027
Ribosome biogenesis [BR:
sch03009
]
Prokaryotic type
rRNA processing factors
Sphch_0027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AEG47730
UniProt:
F6ESS1
LinkDB
All DBs
Position
1:complement(29927..32611)
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AA seq
894 aa
AA seq
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MTMRMLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPREDREALLREEREHAEEEAALRADYDDDDHADAGDGGL
EVVEATHHHDDEEHGEEAAENGNGGDNGRGRGRRGKGDEAADELRRKRMALRRRYKIQDV
IKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLK
SIIAEMALPSTMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLKSDAPALIHNDSD
LIKRAIRDIYNKDIEEVIVEGEYGYKAAKDFMKLLMPSHARRVKQYADAVSLFQRASVED
QLAAMYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIARQ
LRLRDMAGLIVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSRQRLR
TGVLEASTRQCPHCEGTGLVRTASSAGLGALRMLEEEAARGRGSLITLRASQEAAFYVLN
NKRHELDEIEQRYGVRIAILPDGEIEGARMSVEASGPRPERVVDYTPMVEEEDDLDIVEE
LDEEEVEEVEAAHEERGERGEDREGGRRRRRRRRRRGGQRDEHHGEAAAEGEAVDDAEAS
DEEAEAKGEAAPAEAAGEGEGEGRRRGRRGRRGGRRRREGGEDGVSEGSVASEEAVEAVE
AEAVAPEPVVETAAEAPAEEEAPKTRRRPRARKAKEAAAPAAEAVEAVVEAPAEAAPEAP
VAEEAPAKPKRTRRKKPALSEVEGAEPVAEEVAPVAEEAAAKPKRTRRKKPALSEVEGAE
PVVEEAVAVEAVPAVEAPAAETAEAITVDGEAETAEEGEDGTPRRGWWQRTFGQ
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgcgtatgctgatcgatgcgcgccaccgggaagagacccgggtcgcggtcgtc
aaaggtaaccggatcgaggagttcgacttcgaatcggccgagcacaagcagctcaagggc
aatatctacctcgccaaggttacccgcgtagagccttcgctccaggcggccttcgtcgat
tacggcggcaaccgccacggcttcctcgctttcagcgaaatccatccggactattaccag
atcccgcgcgaggatcgcgaggcattgttgcgcgaagagcgcgagcatgccgaggaagag
gccgcgctgcgcgccgattatgacgatgatgatcatgccgatgcgggcgacggcgggctg
gaagtcgtcgaggccacccatcatcatgacgatgaggagcatggcgaggaagcggccgaa
aacggcaatggcggcgataacggcaggggccgtggccgtcgcggcaagggcgacgaagcc
gccgacgaactgcgccgcaagcgcatggcgctgcgccgccgctacaagattcaggacgtc
atcaagcgccgtcaggtgctgctggtgcaggtcgtcaaggaagagcgcggcaacaagggc
gcggcgctgaccacctatctgtcgctggctggccgttattgcgtgctgatgccgaacacg
tcgcatggcggcgggatttcgcgcaagatcagcaacgccgccgaccgcaagcggttgaag
tcgatcatcgcggaaatggcgctgccctccaccatgggctgcatcgtgcgtaccgcgggt
cttcagcgcaccaagccggaaatcaagcgcgacttcgactatctcgcccggctgtgggac
gagattcgcgaaaagacgctgaaatccgatgcccccgcgctgatccacaatgacagcgac
ctcatcaagcgggcgatccgcgatatctacaacaaggatatcgaggaagtcatcgtcgag
ggcgaatatggctataaggcggccaaggatttcatgaagctgctgatgcccagccatgcg
cgccgggtgaagcaatatgccgacgcggtgtcgctgttccagcgcgccagcgtggaggat
cagctcgcggcgatgtacaatcccgtcgtgcagttgaagtccggcggctatctggtgatc
aacccgaccgaggcgttggtgtcgatcgacatcaactccggccggtcgacccgtgaacat
ggcatcgagcagaccgccgtcgccaccaatctggaagcggcgcgggaaattgcgcgccag
ttgcgcctgcgcgacatggcgggcctgatcgtcatcgacttcatcgacatggagatgaac
tccaacatccgcaaggtcgagaaggcgatgaaggaggcgctgaaggacgatcgcgcccgt
attcaggttggccggatttcgggcttcggcctgatggaaatgagccgccagcggctgcgc
accggcgtgctggaagcgtcgacccgccagtgcccgcattgcgagggtacgggccttgtc
cgcaccgcttcgtcggcgggtctgggcgcgctgcgcatgctggaagaggaagcggcgcgt
gggcgcggcagcctgatcacgctgcgggcgagccaggaggcggccttctacgtgctcaac
aacaagcgccacgaactggatgagatcgagcagcgctacggcgtgcgcatcgcgatcctg
cccgatggcgagattgagggcgcgcgcatgtcggtcgaggccagcgggccgcgtccggag
cgggtggtcgactatacgccgatggtcgaggaagaagacgatctcgatatcgtcgaggaa
ctggacgaggaagaagtcgaggaagtcgaagccgcccatgaggagcgcggagagcggggc
gaggaccgtgaaggcggccgccgtcgccgccgtcgccgtcgccgccggggcggccagcgc
gacgagcatcatggagaggctgcggccgagggtgaggctgtcgacgatgcggaggcttcc
gatgaggaggctgaggcgaaaggcgaggccgcaccggccgaggccgctggcgagggtgaa
ggcgaaggccgtcgccggggccggcgcggtcgtcggggtggccgccgccgccgcgagggc
ggtgaagatggcgtgagcgaaggctccgtcgcgagcgaggaagcggtggaagcggtcgag
gccgaagcggtcgcgcctgagccagtggtggaaacagccgccgaagcgccagctgaggag
gaagcgcccaagacccgccgccgcccacgggcgcgcaaggccaaggaagccgccgctcct
gccgccgaagcggtggaggctgtcgtggaagctccggctgaagccgcgccggaagcgccg
gtggccgaggaagcccctgccaagcccaagcggacgcgccgcaagaagcctgccctgagc
gaagtcgaaggggccgagccggtggccgaggaagtcgcgccggttgccgaagaggccgcc
gccaagcccaagcggacgcgccgtaagaagcctgccctgagcgaagtcgaaggggccgag
ccggtggtcgaggaagctgtcgctgtcgaggccgttccggctgtcgaagcgcctgccgct
gaaaccgcggaggcgatcacggtggatggcgaagctgaaacggccgaggaaggtgaagac
ggcacgccgcgccgtggctggtggcagcgcactttcgggcagtaa
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