Sphingobium cloacae: SCLO_1029700
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Entry
SCLO_1029700 CDS
T05301
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
sclo
Sphingobium cloacae
Pathway
sclo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sclo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCLO_1029700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclo03019
]
SCLO_1029700
03009 Ribosome biogenesis [BR:
sclo03009
]
SCLO_1029700
Messenger RNA biogenesis [BR:
sclo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCLO_1029700
Ribosome biogenesis [BR:
sclo03009
]
Prokaryotic type
rRNA helicases
SCLO_1029700
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAV66010
UniProt:
A0A1E1F662
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All DBs
Position
SCLO_1:complement(3413882..3415618)
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AA seq
578 aa
AA seq
DB search
MTFEHLPPLLADALAKKGYEGLTPVQAEVTQAEAEGRDLIVSAQTGSGKTVAFGLAMAGE
LLGEAGKLPVPGLPLALAIAPTRELALQVSRELEWLYGAARARIATCVGGMDAAKERRAL
SHGAHIVVGTPGRLRDHLERGALDLSNLRTVVLDEADEMLDMGFREDLEEILDATPAERR
TLLFSATMPKPIVALARRYQKDALRISTVGEDRGHGDISYQAVTVAPADIENAVVNLLRF
HEAETAILFCATRDNVRHLHASLTERGFAAVALSGEHSQNERNHALQALRDKRARVCVAT
DVAARGIDLPNLSLVIHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESMLR
GAKIPVEWGTPPSREAIQEQDNARLRATLMARAELDEADWALGAELLAEKSAKEIAAMLV
RSARSSLPAPEELLDASEAPPRRDGPRPGFEDTTWFQMNIGRRQNADPRWILPLICRRGH
VSRGEIGAIRIAANETLFEIPSAIASRFMAAVKRTGQASDEGADVAIEQIEGKPREQARE
HRKAGGRPGNGDRPRSGAPHSARPFKGPKRPAPRKPRG
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgaacacctccctcccctgctcgccgacgcgctcgccaagaagggctatgag
ggcctgaccccggtccaggccgaagtgacgcaggccgaagcggaaggccgcgacctgatc
gtttcggcgcagaccggatcgggcaagaccgtggctttcggccttgccatggcgggcgaa
ttgctgggcgaggcgggaaagctgcctgtcccgggccttccgctggcgctggcgatcgcg
ccgacacgcgaactggcgttgcaggtcagccgggaactggaatggctctatggggctgcg
cgggcgcggatcgctacctgcgtaggcggcatggacgcagccaaggaacgacgggcgctt
tcccacggcgcgcatatcgtcgtcggcacgccgggacgcctgcgcgaccatctggagcgt
ggggcgctcgacctgtcgaacctgcgcacggtcgtgctggatgaagccgacgagatgctc
gacatgggctttcgcgaggatctggaggagattctcgacgcgacgccggcggagcggcgg
accttgctgttctccgcgaccatgcccaagcccatcgtggcgctcgcccggcgctaccag
aaggatgcgctgcgaatttccaccgtcggcgaagatcgcggccatggcgacatcagctat
caggcggtgacggtcgcacccgccgacatcgaaaatgccgtggtgaacctgctgcggttt
catgaggcggagacggcgatcctgttctgcgcgacgcgcgacaatgtgcggcatctccac
gcgagcctgaccgaacggggctttgccgccgtggcgctgtcgggcgaacatagccagaat
gagcgcaatcacgcgcttcaggcgctacgcgacaaacgggcgcgggtgtgcgtagcgacg
gacgtggcggcgcgcggtatcgacctgccgaacctcagcctcgtcatccatgtcgagttg
ccgcgcgatgccgaaacgatgcagcaccggtcgggtcgcaccgggcgggcagggaagaag
gggacggcggtgctgatcgtcccctatccgcgacgccgccgcgtcgaatccatgctgcgc
ggcgcgaagatccccgtggaatggggcacgccgcccagccgggaggccattcaggaacag
gataatgcgcgtctgcgggccacgctgatggcacgggccgaactggacgaagcggactgg
gcgctgggtgcggaactgctggcggaaaagagcgcgaaggaaatcgcggcgatgctggtg
cggagcgcccgctcctcgctccccgcgccggaggaattgctcgacgccagcgaagcgccg
ccacgacgggacgggccgcgccccggcttcgaggatacgacctggttccagatgaacatc
gggcggcggcaaaatgccgatccgcgctggatattgcctctgatctgccgccgaggccat
gtcagccggggcgagatcggcgcgatccgcatcgccgccaacgaaacactgttcgagatt
ccctccgccatcgcctcgcgcttcatggcggcggtgaaacggacggggcaggcaagcgat
gagggcgcggacgttgccatcgagcagatcgagggcaagccgcgcgaacaggcgcgcgaa
catcgcaaagctggcggacggcccggcaatggcgaccgcccccgcagcggagcgccgcat
agcgcacgtccgttcaaagggccaaaacgtcccgccccacgcaagccgcgcgggtag
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