KEGG   Schizophyllum commune: SCHCODRAFT_235879Help
Entry
SCHCODRAFT_235879 CDS       T01331                                 

Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
scm  Schizophyllum commune
Pathway
scm03030  DNA replication
scm03410  Base excision repair
scm03420  Nucleotide excision repair
scm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:scm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SCHCODRAFT_235879
   03410 Base excision repair
    SCHCODRAFT_235879
   03420 Nucleotide excision repair
    SCHCODRAFT_235879
   03430 Mismatch repair
    SCHCODRAFT_235879
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:scm03032]
    SCHCODRAFT_235879
   03400 DNA repair and recombination proteins [BR:scm03400]
    SCHCODRAFT_235879
Enzymes [BR:scm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SCHCODRAFT_235879
    6.5.1.6  DNA ligase (ATP or NAD+)
     SCHCODRAFT_235879
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SCHCODRAFT_235879
DNA replication proteins [BR:scm03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    SCHCODRAFT_235879
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     SCHCODRAFT_235879
DNA repair and recombination proteins [BR:scm03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SCHCODRAFT_235879
   NER (nucleotide excision repair)
    Other NER factors
     SCHCODRAFT_235879
   MMR (mismatch excision repair)
    Other MMR factors
     SCHCODRAFT_235879
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 9588032
NCBI-ProteinID: XP_003030053
JGI: Schco1_235879
UniProt: D8Q8Z7
LinkDB All DBs
Position
Unknown
AA seq 823 aa AA seqDB search
MPAKRSRDAPESPNKRQKGKQARIDTFFSSPRTPAHAPSPPTATHEVIEIDSSDDAKEPK
AGPSKAPSHASPPTPFVRTFSLKNNHAPPSYPSLTTDSLSFDVAQVSAQWTAGSPVPYSF
LAHTLKSVSETKSRIAITDALTNCLRVVVQHHPASLLPAVYLLSNTVAPSYESVELGLGT
SISKSIQQISGLSSAALRDLYNQLGDVGDVAFAAKSKVRTLIPHPPLLVPGVYKSLLSIA
HCKGQGAVKEKQKIVEKLLIASKGEETRFLARTLTQNLRVGAVRTTLLIALSRAFVLTPR
PDGRPSGLHASEKLLDSVRALGSPPKSPQKKKRADSDDDARERMKALFSQAESLVKQVYV
RHPCYEDIIEALVTEGLDGLDQHVSLAVGIPLMPTLGSPMRSLDEVYDILQDHPFAAELK
YDGQRAQIHGRRDDEGNTSVRIFSRHLEDMTTKYPDVVHMIQIMCGRTTGPTSFIIDSEI
VALDPETGALKTFQELSNRARKDVQLADVRVAVGVFAFDLMFLDGQELIGLPFRERRDKL
YSRFPAFVPEEKAIARFSHVDCCDSQLGRDAIEGFMVKATESRCEGLMIKLLDSCELEER
DAKKAKTRRKPFPATYEPDKRTAAWLKLKKDYITGLGDSFDLVPVGAWHGNGRKAKWWSP
ILLALKSEDGELVAVCKCMSGFTDVFYKALNDRYPLTEQSETCSKQPLWGGDFGGFRPEV
YFKPHEVWEVRAADITVSPVSVAAKGLVSDSRGLSLRFPRYIKTREDKGIEEATTASQVA
RMYQQQQARGIDGGGNDEGDLLDVDVDEDIEEHSDSAGEDDST
NT seq 2472 nt NT seq  +upstreamnt  +downstreamnt
atgccggccaagcgctctcgcgatgcccccgagtccccaaacaagcggcagaaggggaaa
caggcgcgcatcgacaccttcttctcctccccccgcacgcccgcgcacgccccctcgccc
ccgacggccacgcacgaggtcatagaaatcgacagctccgatgacgcgaaggaacccaaa
gcagggccttccaaggcgccttctcacgcttccccgcctactcctttcgttcggaccttc
tcgctcaagaataaccacgccccgccttcatatccatcgctgactacggattcgctctcc
ttcgatgtcgcccaggtatcggcgcagtggaccgccggcagccccgtgccctattccttt
ctcgcccatacgctcaaatcggtctccgagaccaagtcccgcattgccatcacagatgca
ctcaccaattgtcttcgcgttgtcgttcagcaccacccggcctcccttctcccggccgtc
tatcttctgtcgaataccgttgcgccatcctatgagtcggtagagctcgggcttggaacc
tccatctccaaaagtattcagcagatttccggtctctcgtcagctgctcttcgagatttg
tacaatcagctaggcgacgtgggcgacgtcgccttcgcggcgaagtccaaagtgcggaca
ctcatcccacacccaccgctccttgtacccggagtttacaagtcgttattgtctatcgcc
cactgcaaaggccagggcgccgtcaaggaaaaacagaaaatcgttgaaaaactactcatc
gcgtccaaaggcgaagagactcgatttttggcccgtaccctgactcagaacctgcgcgtc
ggcgcagtacggacgacccttctcatcgctctgtctcgcgccttcgtgctaactcctcgg
ccggacgggcgaccatcgggactgcatgcttcagagaaattactagactctgtccgcgcc
ttgggttcaccacccaaaagcccacagaagaagaagcgcgctgactcggacgacgatgcg
cgcgaacggatgaaggcccttttctcgcaagcggagagcctagtcaaacaagtttatgtc
cgccatccctgctatgaggacatcatcgaagctttggttacggaaggactcgacgggctg
gatcagcatgtctcccttgctgtaggtatacccctcatgccgactttggggtcgccgatg
aggtcccttgacgaggtctatgacatcttgcaagaccacccctttgccgcggagctcaag
tatgatggtcagcgcgcgcagatacacggtcgaagagatgatgagggaaatactagtgtc
cgcatcttttcccgccatctcgaggacatgacgacgaagtatccagatgtcgtccacatg
atccagattatgtgcggtagaactacaggtcctacatccttcatcatagactctgagatc
gtcgcgctcgaccccgagaccggggcgttgaagaccttccaagagctctccaacagggca
cgtaaagatgtccagctggcggacgtgcgcgtggccgttggcgtcttcgcattcgacttg
atgttcctcgacgggcaggagctcataggcctgccgttcagagagcgacgcgacaaactg
tactcgcgattcccggcctttgttcccgaggagaaggccatcgcgcgattctcgcacgtt
gattgctgcgatagtcagctcgggcgagatgctattgagggcttcatggtgaaagcgacg
gagagccgatgcgaggggctgatgatcaagcttctcgacagctgcgagttggaggagcgg
gacgcaaagaaggcgaagacgcggcgcaagccgttcccagccacgtacgagccggataaa
cgcaccgcggcgtggttgaagctgaagaaggactacatcacgggcttaggcgattccttc
gaccttgttccggtgggagcgtggcacgggaacgggcgcaaggccaagtggtggtcgccc
atcctactcgccttgaaatcggaggacggcgagcttgtggccgtctgcaagtgcatgtcc
ggctttacggatgtgttctacaaggcattgaatgaccgctacccgttgaccgaacaatca
gagacatgctcaaagcagccgctctggggcggtgatttcggtggcttcaggcccgaggtc
tacttcaagccgcacgaagtatgggaggttcgcgctgctgacataaccgtctctcctgtc
tctgtagcagccaagggcctcgtctctgactcgcggggcttgagcttgcgtttcccgcgt
tatatcaagacgcgggaagacaaaggcatcgaagaggcgacaactgccagtcaggtggcg
cgcatgtaccagcagcaacaggcgcgcgggatagacggtggaggcaacgacgagggagat
ctgctggatgttgatgttgatgaggacattgaggagcattcggattcagccggcgaagat
gattcgacgtga

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