KEGG   Solitalea canadensis: Solca_1673Help
Entry
Solca_1673        CDS       T02084                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
scn  Solitalea canadensis
Pathway
scn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:scn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Solca_1673
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:scn03400]
    Solca_1673
Enzymes [BR:scn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Solca_1673
DNA repair and recombination proteins [BR:scn03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Solca_1673
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2 DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID: AFD06739
UniProt: H8KQK1
LinkDB All DBs
Position
complement(2018048..2020480)
Genome map
AA seq 810 aa AA seqDB search
MPKLKEYIDKRNFSQTKEPVGGDVTGKKLAFVVQRHHASRLHYDFRLQMKGVLKSWAVPK
GPSLNPQDKRLAMMVEDHPLDYKDFEGEIPKGNYGAGNVHIWDEGYYIPIADYKDPEKGL
LAELKSGNLKIILMGKRLKGEFAIVKIKSDEENAWLLIKHKDKYAVNKDYDSEDFVAAKI
KNKKNITSEQTATKKKSVRTHTTIKPITPMMATLGSDMVKGDDWIFEPKLDGYRIVAITD
GYHNSKLFTRNQLDYTSKYENVAEILKKLDRACVLDGEVVKLNDDGKPSFNALQLFGKNP
VGKVHYYVFDLLQLDEHSLLEMPLTDRKKILEALVKSIDSPYIIFTPYESGNGNKLLEEA
RKNNSEGIMAKKADSIYHPGYRTKEWIKLKVNQEDEFIIGGYTEPRGKKGLIGAFLLGEN
KNGNLTFSGKCGTGLDELRDQEIYATLKDYEITKSPFTTKITNDTKIHWLKPELVCTVKY
SERTEDGKLRHPVFKALREDKTVTDMKPAEDNYEIKANGNKVTITNRNKVYFPDNGITKG
DVVDYYDTIADYILPYLKDRPLSLHRHPNGINAPSFFQKDIETKSYNWLKTVSIHSESND
KDIDYLVCNDKKTLLYMANLGCIEINPWLSRYPGIEKPDFLVLDLDPEQIGFESVIEVAL
TIKELLDSLSIPSYPKTSGSTGIHIYIYTGAKYHYDSVKLFAEWLAGKAHELIPSISSIE
RSPQKRQKKVYIDFLQNRKGQTIAAAYSLRPKPGATVSWPLSWDEVTKELKMEDYTIKNV
PSLLTKRKNPWADIYSSTVNIAAIMKKLQV
NT seq 2433 nt NT seq  +upstreamnt  +downstreamnt
atgcccaaacttaaggagtatattgataagcgcaacttctcacaaaccaaagaaccagtg
ggtggagatgttacgggcaaaaaattagcttttgttgtacagcgtcaccatgcttcccgg
ttgcattatgattttcgcttgcaaatgaagggtgtgctaaaaagttgggctgttcctaaa
ggcccttccttaaatccacaggataagcgattggccatgatggtagaagatcatcccttg
gattataaagactttgagggagaaatccctaaagggaattatggagccggaaatgtacac
atctgggatgaagggtattatattccaattgcagactataaagatcccgaaaaggggtta
ctcgcagaacttaaaagtggcaatctgaagattatcctgatggggaaacgactcaaagga
gaatttgccatcgtaaagattaagtcggatgaggaaaatgcgtggttgttaataaagcat
aaagataaatatgctgtaaataaggattacgacagcgaagactttgtagctgcaaaaatt
aaaaataaaaagaacatcacttcggagcaaacagcaacaaaaaaaaagtccgttagaacc
catactacaataaaaccaattacccccatgatggccacacttgggtctgatatggtaaaa
ggtgatgattggatatttgaacctaagttagatggctatagaatagttgccattacagat
ggttaccataacagtaaattatttactaggaatcaattagactatacgtcaaaatacgaa
aacgtggcggagatcttaaaaaaactcgaccgggcatgcgttttggacggagaagttgta
aagttgaatgatgatggtaagccaagttttaatgcattacaactctttggcaaaaatccc
gtagggaaagttcattattatgtgtttgacctgctgcaacttgatgaacattcattgctt
gaaatgcccttgactgatcgtaaaaagattttggaggcgcttgttaagtcgattgactca
ccctatatcattttcacaccctatgaatcgggtaacgggaataagcttttagaagaggcc
cggaagaacaacagtgaaggcattatggctaaaaaagccgatagcatttaccacccgggt
taccggactaaggaatggatcaaactaaaggtgaaccaggaagatgagtttataattggt
ggatatactgaacctcgcgggaaaaaaggtcttattggtgcttttttattgggtgaaaat
aaaaacgggaacctgaccttttccggaaaatgtggaacaggcttagatgagttgcgcgat
caggagatttatgctacactgaaggattatgaaataactaaatctccattcacaacaaaa
attaccaatgatactaaaatacattggctgaaaccagaattagtttgtacggtcaaatac
tcggagcgtacggaggacggaaaacttaggcatcctgtttttaaagctttaagagaagac
aaaactgttacagatatgaaaccagcggaagataattatgaaattaaggctaatggtaat
aaagtaactatcacgaatcgaaacaaggtttattttccggataatggtattaccaaaggt
gatgttgttgattattatgatactatagctgattatattctcccctatcttaaagatcgc
ccattaagtttacatcgccatcctaatggcatcaatgcgccaagcttctttcagaaagac
attgaaactaaatcctacaattggctaaaaactgtttcaatacactctgagagtaatgat
aaagacattgattatttagtatgcaatgacaaaaaaacattgttgtacatggctaattta
ggttgcatcgaaataaacccatggctatcaaggtatcctggaattgaaaagcctgatttt
ttggtattggatctcgatccggaacagattggttttgaaagtgttattgaagtcgcatta
acaattaaagagcttttggattccttatcaataccatcctacccgaaaacttcaggttcc
acaggaattcatatttatatatataccggtgctaagtatcactatgacagtgtaaaactg
tttgcagaatggctggcaggtaaggcgcatgagctaattccatccatttctagtattgag
cggagtccgcaaaaacgacaaaaaaaagtgtatatcgatttccttcaaaatcgtaagggg
caaaccattgctgctgcctatagtttacgccctaaaccaggtgcaactgtttcctggcca
ttatcatgggatgaagtaactaaagaacttaaaatggaggattatacgattaaaaacgtt
ccgtcattattaaccaaacgaaaaaatccttgggcagatatttattcttctacggtaaat
attgcagctattatgaagaagttgcaggtgtga

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