Staphylococcus cohnii: BZ166_01490
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Entry
BZ166_01490 CDS
T05008
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
scoh
Staphylococcus cohnii
Pathway
scoh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scoh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BZ166_01490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scoh03019
]
BZ166_01490
03016 Transfer RNA biogenesis [BR:
scoh03016
]
BZ166_01490
Enzymes [BR:
scoh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BZ166_01490
Messenger RNA biogenesis [BR:
scoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BZ166_01490
Transfer RNA biogenesis [BR:
scoh03016
]
Prokaryotic type
tRNA degradation factors
BZ166_01490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rho_RNA_bind
OB_Dis3
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AQM40501
LinkDB
All DBs
Position
complement(303200..305572)
Genome browser
AA seq
790 aa
AA seq
DB search
MNLKQSIEEIIKQPDYEPMSVSDFQDALGLNSADSFRDLIKVLVELEQTGLIQRTKTDRY
QRKESKKSKQSKLIQGTLSQNKKGFAFLRPEDDEMDDVFIPPTKINRAMDGDTVLVELQN
SKGEHKGKLEGEVKSIEKHSVTQVVGTYSEARHFGFVLPDDKRIMQDVFIPKGHNLGAID
GHKVLVQITKYADGTDNPEGQVSAILGHKNDPGVDILSIIYQHGIEIEFPDKVLEEAEAV
PDEIKPSEIEGRRDLRNELTITIDGADAKDLDDAISVKKLDNGHTQLTVSIADVSYYVTE
GSALNEEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCQMELDERGHVVNH
EIFDSVIHSNYRMTYDEVNEIITDQNEDTRKQYNEVTPMLDLAKDLSERLINMRKRRGEI
DFDISEAKVLVNDEGIPTDVELRKRGEGERLIESFMLAANETIAEHFDRLNVPFIYRVHE
QPKSERLRQFFDFITNFGLMIKGTGEEVHPSTLQKIQQEVEGQPEQMVISTMMLRSMQQA
RYDDVNLGHFGLSAEHYTHFTSPIRRYPDLIVHRLIRKYLIDKTMDDKTLNKWEEALPEI
ADHTSQRERRAIEAERDTDELKKAEYMVQHIGEEYEGIISSVANFGMFIELPNTIEGMVH
VSEMTDDYYHFDERQMAMIGERQAKVFRIGDPVKIKVVNVDVDERMIDFQIVGMPLPKKE
RSPRPSRGKTIQAKPRGQSLDNSNNDKKGKKKQRKGKNQRNKNKQASGNTKHKPFYKDKK
VKNKARKKKK
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaagcaatccatagaagaaattattaagcaaccagattatgaacccatgtct
gtatcagattttcaagatgcattaggtttaaatagtgccgactcatttagagacttaatc
aaggtacttgttgaattagaacaaacaggattaattcaacgtacgaagacagacagatac
caacgtaaggaatctaaaaaatcaaaacaatcgaaattaatacaaggtacgcttagtcaa
aataaaaaaggctttgcattcttacgtcctgaagacgatgagatggatgatgtctttatc
ccacctacaaagattaatcgtgcaatggatggagatactgtacttgtcgaattacaaaac
tctaaaggtgaacataaaggtaagctggaaggtgaagtaaaatcaatcgaaaaacactcc
gttacccaagtggtgggcacgtacagtgaagctcgacattttggatttgtcttaccagat
gataaacgcattatgcaagatgtgtttatacctaaaggtcataatttaggtgcgatagat
gggcataaagtattagtacaaatcacgaaatatgcggacggtaccgataacccagaaggc
caagtttcagcaattttaggtcataaaaatgatccaggtgtcgacattttgtcgattatc
tatcaacatggtattgaaatagaatttccagataaggtattagaagaagctgaagctgta
ccagatgaaatcaaaccatctgaaatcgaaggacgtcgtgatttaagaaatgagctaact
attacaattgatggcgcagacgctaaagacttagatgacgcaattagtgtcaagaagtta
gataatggtcatacacaattgacagtgagtatcgctgatgtcagttattatgtaacggaa
ggatcagcactaaatgaagaagcatacgaccgtgcaacaagtgtatatttagttgaccga
gtaattccaatgatacctcatcgacttagtaacggtatttgttcattgaatccacaagta
gataggctaactttaagttgccagatggaattagatgaacgtggtcatgtggttaatcat
gaaatctttgatagtgtgattcattcaaattatcgtatgacatacgatgaagtgaatgaa
attattacagatcaaaatgaagatacgcgcaaacaatataacgaagttacaccaatgctt
gatttagctaaagacttgtctgaacgtttaatcaacatgcgtaaacgccgtggtgaaatt
gacttcgatatcagtgaagccaaagtacttgtcaatgatgaaggcattccaacagacgta
gaattaagaaaacgcggtgaaggtgaacgtctcatcgaatcgtttatgttagcagccaac
gaaacgatagcagaacatttcgatcgattaaatgtaccatttatatatcgtgtacacgag
caaccaaaatcagaacgtttacgccaattctttgattttattactaactttggtttaatg
attaaaggtactggcgaagaagtacatccatcaactttacaaaaaattcaacaagaagta
gaaggtcaaccagagcaaatggtcatttctactatgatgttacgttcaatgcaacaagca
cgttacgatgatgtgaatctaggtcacttcggcctgtcagcagaacactatacacacttc
acatcaccgattcggagatatccagatttaatcgtgcatagacttattcgtaaatatctt
attgataaaacaatggatgataaaacacttaataaatgggaagaagcattaccagaaatt
gctgatcatacatctcaaagagaacgtagagcgatcgaagcagaacgtgacaccgatgaa
ttgaagaaagcagaatatatggttcaacatatcggagaagaatatgaaggtatcatcagc
tctgtagctaattttggtatgtttatcgaattgccaaatacaatcgaaggtatggtacat
gtatcagagatgaccgacgattattatcacttcgatgaacgtcaaatggcaatgattgga
gaacgccaagctaaagtcttccgcattggtgatccagttaaaatcaaagttgttaacgta
gatgttgatgagcgtatgatcgatttccaaattgtcggtatgccattaccgaaaaaagag
cgtagtccaagaccttcacgtggtaagacgattcaagcgaagccacgcggtcaatcatta
gataactcaaataatgataaaaaaggcaagaagaaacaacgaaaaggtaaaaaccaacgc
aataaaaacaaacaagcaagtggtaataccaaacacaagccattttacaaagataaaaaa
gtgaaaaataaagctcgtaagaagaaaaaataa
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