Salinivibrio costicola: HBA18_05660
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Entry
HBA18_05660 CDS
T06511
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
scot
Salinivibrio costicola
Brite
KEGG Orthology (KO) [BR:
scot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scot03032
]
HBA18_05660 (topA)
03400 DNA repair and recombination proteins [BR:
scot03400
]
HBA18_05660 (topA)
Enzymes [BR:
scot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HBA18_05660 (topA)
DNA replication proteins [BR:
scot03032
]
Prokaryotic type
DNA Topoisomerases
HBA18_05660 (topA)
DNA repair and recombination proteins [BR:
scot03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HBA18_05660 (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QIR05899
LinkDB
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Position
1:1164346..1166979
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AA seq
877 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTGSTQGGKKAAPVSTKGLSAEE
KARIKKEKEKKALINKMGVDPYNGWQAKYQVLPGKEKVVAELKQLAEKADHVYLATDLDR
EGEAIAWHLRELIGGDHDRFKRVVFNEITKNAITQAFETPGDINIDGVNAQQARRFLDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREHEIKAFIPEEFWDVHADTLTPNAQAL
RLLVAQQNGKAFKPKNKDQAMAAVSALEHASFVVRDREDRPSTSKPSAPYITSTLQQAAS
TRLGFGVKKTMMLAQRLYEAGYITYMRTDSTNLSKEAVEAARGHIASEYGEQYLPESANV
YGAKANAQEAHEAIRPSDVGVSASDLQGMDPDAHRLYDLIWRQFVACQMMPAKYDSTTLT
VAAGDFSLKAKGRTLRFDGWTRVQRPSGKNEDQTLPAVDVGETLKLEQLDPKQHFTKPPA
RFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLNHSFA
DLMDYDFTARMEASLDKIAVGDIDWKAVLDNFFADFTSELETAEQDEDDGGMKPNHMVMT
DIDCPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLMDEDGIVNVLEEDVETADL
RAMKRCPICETAMDSYLIDQHRKLHVCGNNPSCEGYVVEKGEFKPKGYDGPVVECDKCGS
DMVLKNGRFGKYMGCTNEECKNTRKILKNGEIAPPKEDPVHFPELPCENSDAYFVLRDGA
SGLFMAASNFPKSRETRAPLVEELHRFKDRISDKFKYLADAPQEDPDGRPTVVRFARKTK
ENYVRSEEDGKPTGWSAFFVDGQWEVTDKRKKKTKAD
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatctctcgtcatcgtggagtccccagcaaaggcgaaaacgatcaacaaatac
ctcggcaaagacttcatcgtgaagtcgagtgtcgggcatgttcgtgacctgccaactggt
tcgacgcagggcggcaaaaaagccgctccagtgtcaacgaaagggctcagcgccgaagaa
aaagcgcgaatcaagaaagaaaaagaaaagaaggcgctcatcaacaagatgggcgtcgat
ccttacaatggttggcaagcgaaataccaagtcctgccgggtaaggagaaagtggttgcc
gaactcaagcagctagcggaaaaagcggatcacgtttatctcgcaacggatttggaccgc
gaaggggaagccattgcttggcacctgcgggaactgatcggtggcgaccatgatcgcttc
aaacgcgtggtgtttaacgaaatcaccaaaaatgcgattacacaagcctttgaaacaccg
ggcgatatcaatattgatggcgtcaatgcgcagcaagcccgccgtttcctcgaccgtgtc
gtcgggtttatggtctcgccgttgctgtggaaaaaagttgcgcgtggcctatcggcgggt
cgtgttcagtcggtggcggtaaaactgctggttgaacgcgagcatgagattaaagccttt
attccagaggaattctgggatgtgcatgcggataccctaacgccgaacgcacaggcactt
cgcttgctggtggcacaacaaaacggcaaggcgttcaagccgaagaacaaagatcaggcc
atggcggcagtgtcggcgcttgagcatgcaagctttgtggtacgcgatcgcgaagatcgt
ccgtcaaccagcaagccgtctgcgccttatatcacctcgacattgcagcaggcggccagt
acccgcttgggctttggggtgaaaaagaccatgatgctggctcagcgtttgtatgaagcc
ggttacatcacctatatgcgtaccgattcgaccaacctcagcaaagaagcggtcgaagcg
gcccgtggccatattgcgagtgaatatggcgagcaatatttgccagagtctgcgaatgtg
tatggtgcgaaggcgaatgcacaggaagcgcacgaagcgattcgtccctctgacgtgggt
gtgagtgcgagtgatctgcaaggcatggacccagacgcccatcgtctgtatgacttgatt
tggcgccagtttgttgcctgtcaaatgatgccggcgaagtatgattcaaccacactgacc
gtcgcagccggtgatttctcgctgaaagcgaagggacgcacgctgcgctttgatggctgg
acacgcgttcaacgcccatcgggtaaaaacgaggatcaaaccttaccggctgtcgatgtg
ggtgaaaccctcaaattagagcagcttgatcctaagcagcactttaccaagccaccggca
cgctttactgaggccgccctggtaaaagagcttgaaaagagagggatcggtcgaccatcg
acctatgcgtctatcatttccaccattcaagaccgcgggtatgtgcgggttgaaaaccgt
cgcttttacgctgagaagatgggcgaaattgtgaccgatcgactcaaccatagcttcgct
gatctgatggattatgattttaccgcgcggatggaagcgtcgttagacaaaattgccgtc
ggtgatatcgattggaaggcagtgctcgataacttctttgccgactttacgtcggagctg
gaaaccgcagagcaagacgaagacgacggtgggatgaagcccaaccacatggtgatgaca
gatatcgactgtccaacctgtggccgtaaaatgggtattcgtaccgcgtcaacaggggta
ttccttggttgttcaggctacgcgttaccaccgaaagagcgttgtaaaaccaccatcaac
ctgatggatgaagatggtattgtcaacgtgcttgaggaagacgttgaaacggccgatctt
cgagcgatgaagcgttgtccgatttgcgaaaccgccatggattcttacctgatcgaccag
caccgaaaactgcacgtttgtggtaataacccaagctgtgaaggttatgtggtcgaaaaa
ggtgaatttaagccaaaaggctacgatggcccggtcgttgagtgcgacaagtgtggtagc
gatatggtgctgaaaaatggccgcttcggtaaatacatgggttgtaccaacgaggaatgt
aagaacacgcgtaagatcctcaaaaatggtgagattgctccaccgaaagaagatcccgtg
catttccccgagttaccgtgtgaaaactcggatgcgtatttcgtgttgcgtgatggtgca
tcgggtctatttatggccgcgagtaacttcccgaaatctcgtgaaacgcgtgcacctttg
gttgaagagcttcaccgctttaaagaccgtatttctgataagttcaaatacttagcagat
gcgccgcaggaagatccggacgggcgtccgacagtggttcgctttgcgcgcaaaacaaaa
gaaaactatgtgcgcagtgaagaagacggaaaaccgacaggttggtcagcgttctttgtt
gatggccagtgggaagtcaccgacaaacgtaagaaaaaaaccaaggctgactaa
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