Spiroplasma corruscae: SCORR_v1c01060
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Entry
SCORR_v1c01060 CDS
T05302
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scou
Spiroplasma corruscae
Pathway
scou03030
DNA replication
scou03410
Base excision repair
scou03420
Nucleotide excision repair
scou03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCORR_v1c01060 (ligA)
03410 Base excision repair
SCORR_v1c01060 (ligA)
03420 Nucleotide excision repair
SCORR_v1c01060 (ligA)
03430 Mismatch repair
SCORR_v1c01060 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scou03032
]
SCORR_v1c01060 (ligA)
03400 DNA repair and recombination proteins [BR:
scou03400
]
SCORR_v1c01060 (ligA)
Enzymes [BR:
scou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SCORR_v1c01060 (ligA)
DNA replication proteins [BR:
scou03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCORR_v1c01060 (ligA)
DNA repair and recombination proteins [BR:
scou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SCORR_v1c01060 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCORR_v1c01060 (ligA)
MMR (mismatch excision repair)
DNA ligase
SCORR_v1c01060 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCORR_v1c01060 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ASP27881
UniProt:
A0A222ENA1
LinkDB
All DBs
Position
121969..123963
Genome browser
AA seq
664 aa
AA seq
DB search
MKDIKKVIEKLKKEINILEHAYYVLDNPLVDDTEFDAKLNLLKKLEKENPDLVTNDSPTQ
RVGGLISEKFEKHIHKFPMLSLDNAFDKEDLLEFSSNINKQVKFNSHSFFVEPKIDGLSI
SLIYEKGKLVKGVTRGDGIQGEDVTFNVRTIRSIPLTITDNSDYFEVRGEVFLSKKEFHR
INAERKEQGEEIFANPRNAAAGTLRQLNPRIVASRKLDIYLYYYLNRERFETHSDSLDYI
NSLGFKVNKLGKQCSNIDEVYSHIELIKDKRIALDYEIDGAVVKVNDFKLYDEIGYTSKF
PKWAIAYKYPAEIKSTVLKEIFATVGRTGKITYNAILEPVSLAGTTVQAATLHNAEYIYQ
KKIKVGANVKVKKAGDIIPEVVEVVEDESYPDLKEWIKVDNCPACGSYLEIFSDEVDQYC
INFNCERKIIKSIEHFVSRDAMNIEGMSIKIIEKLYDNKIIKNVIDLYHLENKKKEILQL
EKMGEKLLSNLLLAIEKSKTNDANRFLFGLGIRYVGSKTSKLLLENFKSIDNLLKANKEE
IEKIFDVGPKVAQSIIDWISIESNIMLVNSFKKLGLNMSYSKHSNHNNSPIAGKSFVITG
TLSKPRNYFVELIESNGGKVLNSISKSTNFLLAGDEAGSKLTKAKNLNINIINEEVFLNI
LEEE
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatattaaaaaagttattgaaaaattaaaaaaggaaattaatattttagaacat
gcttattatgtacttgataatcctttggttgatgacactgagtttgatgctaagttaaac
ttactaaaaaaattagaaaaagaaaatccggacttagttactaatgattcacccacacaa
agagtcggtggtttaatatcagaaaagtttgaaaaacacatccataagtttccgatgtta
agcttggacaatgcgttcgacaaagaagatttgttagaatttagttcaaatataaataaa
caagtcaaatttaattctcattcattttttgtagaaccaaaaattgatggattatctata
tcattaatttatgaaaaaggaaaactagttaaaggtgtcacaagaggtgatggaattcaa
ggagaagatgtaacttttaatgtaagaacaattagaagtattccacttactataacagat
aattctgattactttgaagtaaggggtgaagtttttttatctaaaaaagaatttcataga
attaacgcagagagaaaagaacagggtgaagagatttttgctaatccaagaaatgcagca
gcaggaacattgagacaattaaatcccagaatagtagcgtcaagaaagttagatatatat
ttatattattatttaaatagagaaagatttgaaacacattctgattctttagactatata
aattcattaggttttaaagttaacaagttaggaaaacaatgttccaatattgatgaagta
tatagtcatatagaattaattaaagataaaagaatcgcattagactatgaaattgatgga
gctgttgtaaaagttaatgattttaagctttatgatgaaataggatacacttcaaagttt
ccgaagtgggccatagcttataagtatcctgctgaaattaaaagcacagtcttaaaggaa
atatttgcaacagtaggtagaactggaaaaataacttataatgcaattttagaaccagta
tccttagcaggaactacagttcaagcggctacactacataatgcagaatacatttatcaa
aaaaaaataaaagttggtgctaatgtaaaggtaaagaaagcgggggatattattcccgaa
gtagtagaagtagtagaagatgaaagttatccagatttaaaagagtgaataaaagttgat
aactgtccagcatgtggttcttatttagaaatttttagtgacgaagttgatcagtattgt
attaactttaactgtgaaagaaaaattataaagagcattgagcattttgtttcaagagat
gcaatgaacattgaaggtatgagtataaaaattattgaaaaactttacgacaataaaata
ataaaaaatgtaatcgatttatatcatctagaaaataaaaaaaaggaaatactccagtta
gaaaagatgggagagaaattattaagtaacttattattagctattgagaagagtaaaaca
aatgatgctaatagatttttgtttggtctaggtattaggtatgttggtagtaaaacttca
aagttacttctagaaaattttaaatcaattgataatttattaaaagctaacaaggaagaa
atagagaagatttttgatgttggaccaaaggttgctcaatcaataatagattgaataagt
attgaatcaaatattatgcttgttaatagttttaagaaacttggattaaatatgtcatat
agtaaacatagcaatcataataactccccaatagcaggtaaaagttttgtaataacaggt
acactttccaaaccaagaaattattttgttgagttaattgaatctaatggcggtaaggtt
ttaaactcaattagtaaaagtacaaatttcttattagcaggagatgaagcagggagtaaa
cttacaaaagcaaaaaatttaaatattaatattattaatgaagaagtttttttaaatata
ttggaggaagagtaa
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