Streptococcus parasanguinis ATCC 15912: HMPREF0833_11648
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Entry
HMPREF0833_11648 CDS
T01545
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
scp
Streptococcus parasanguinis ATCC 15912
Pathway
scp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF0833_11648 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scp03021
]
HMPREF0833_11648 (rpoB)
03400 DNA repair and recombination proteins [BR:
scp03400
]
HMPREF0833_11648 (rpoB)
Enzymes [BR:
scp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF0833_11648 (rpoB)
Transcription machinery [BR:
scp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF0833_11648 (rpoB)
DNA repair and recombination proteins [BR:
scp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF0833_11648 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
NusG_add
Motif
Other DBs
NCBI-ProteinID:
AEH56679
UniProt:
F8DGR7
LinkDB
All DBs
Position
1769211..1772780
Genome browser
AA seq
1189 aa
AA seq
DB search
MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFLDHGLKEVFEDVLPISNFTD
TMELEFVGYEIRDPKYSLEEARIHDASYSAPIFVTFRLVNKETGEIKTQEVFFGDFPIMT
EMGTFIINGGERIIVSQLVRSPGVYFNDKVDKNGKVGYGSTVIPNRGAWLELETDSKDIA
YTRIDRTRKIPFTTLVRALGFSGDDEIIDIFGDSELVRNTIEKDIHKNPMDSRTDEALKE
IYERLRPGEPKTAESSRSLLVARFFDPRRYDLAPVGRYKINKKLNIKNRLLNQTIAEPLV
DAETGEILVEAGTVMTRDVIDSISEQLDNGLNKITYIPNDAAVLTEPVELQKFKVVAPTD
PDRVVTIIGNANPSDKVRIVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELL
ANQVRLGLSRMERNVRERMSVQDNDVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHNP
LSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGH
LNKYGFIQTPYRKVDREKGVVTNEIVWLTADEEDEYIVAQANSKLNEEGGFAEPIVMGRH
RGNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKAP
YVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLDVYHIQKFRRSNSGTAY
NQRTLVKVGDVVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKE
DVYTSVHLEEFESETRDTKLGPEEITREIPNVGEDALRDLDETGIIRIGAEVKEGDILVG
KVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRANGDELQSG
VNMLVRVYIAQKRKIRVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPS
RMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVKEAGMDSDAKTILYDGRTGE
PFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSMVTQQPLGGKAQFGGQRFGEMEVWALE
AYGASNVLQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRV
LDEDDQEVELRDLDEGEDDDVIHVDDLEKAREKAAKEAKAAFDAEESEK
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgacgttcaatacgggaaacatcggacccgtcgtagtttttcaagaatc
aaagaggttcttgatttaccaaacttgattgaaatccagacagactcattcaaagatttc
ttggatcatggcttgaaggaagtatttgaagatgtgcttcccatctcaaacttcacggat
acaatggaattggaatttgtgggttatgaaatccgcgaccccaagtattcgcttgaagaa
gcgcgcatccacgatgccagctactcagcaccaatctttgtgaccttccgcttggtcaac
aaagaaacaggtgaaatcaagacccaagaagttttctttggtgatttcccaatcatgact
gaaatgggaacctttatcattaatggtggagaacggattatcgtatctcagttggtccgc
tcaccaggtgtctacttcaatgataaggtggacaagaatggtaaggttggttatggatca
actgttatcccgaaccgtggggcttggttagagcttgaaactgactcaaaagatattgct
tacacgcgcatcgaccgcacacgtaaaattccatttacaactcttgtgcgtgctcttgga
ttctctggagatgatgaaatcatcgatatctttggggacagcgaattggttcgcaatacc
attgaaaaagacatccacaaaaatccaatggattcacggacagatgaagccctcaaagaa
atctacgagcgtcttcgtccaggtgaaccaaaaacagcggaaagctcacgtagcttgttg
gtagcccgtttctttgatccacgtcgttatgacttggcaccagttggtcgctacaagatc
aacaagaaactcaatatcaagaaccgcttgttgaaccaaacaatcgcagaaccattggta
gatgctgaaacaggggaaatccttgtagaagctggtactgttatgacgcgcgatgtgatc
gacagcatctcagaacaattggataacggtttgaacaaaatcacctacattccaaatgat
gctgctgttttgacagaaccagttgaattgcaaaaattcaaagttgtcgctccaacagat
ccagaccgcgttgtcaccatcatcggaaatgccaacccatctgacaaagtacggattgtg
actccagctgacatcttggcagaaatgagctatttcttgaaccttgcagaaggccttggc
cgtgtagatgatatcgaccaccttggaaatcgtcggattcgtgccgttggtgaattgctt
gccaaccaagtgcgtcttggactttcacggatggaacgaaacgttcgcgaacggatgtct
gtacaagataacgacgtcttgacaccacaacaaatcatcaacatccgcccagtgactgca
gcaattaaagaattctttggatcttcacagttgtcccagttcatggaccaacacaacccg
ctttctgagttgtctcacaaacgtcgtttgtctgccttagggcctggtggtttgacacgt
gaccgtgccggatatgaagtgcgtgacgtgcactatacccactatggtcgtatgtgtcca
atcgaaacacctgaaggaccaaacatcggtttgattaacaacttgtcatcctacggacac
ttgaacaaatatggtttcatccaaactccataccgtaaagtagaccgtgaaaaaggtgtg
gtgaccaacgaaatcgtttggttgacagccgatgaagaagatgagtacattgtcgcacag
gctaactctaagttgaacgaagaaggtggttttgctgagccaatcgttatgggacgtcac
cgtggtaataaccaagaattcccatctgatcaagtcgactacatggacgtttctccaaaa
caagtagttgctgttgcgacagcatgtattcctttcttggaaaacgatgactctaaccgt
gccctcatgggtgccaacatgcagcgtcaggctgtcccattgatcgatccaaaagcacct
tatgtgggtactggtatggaataccaagcagcccatgattcaggagctgcagtgattgct
caatatgatggtaaagtcacttatgcagatgcggacaaggtagaagttcgtcgtgaagac
ggttcgcttgatgtctaccatattcaaaaattccgtcgttcaaactcaggtactgcctac
aaccaacggacccttgtaaaagttggcgatgtcgttgaaaaaggcgactttattgctgac
ggtccatcgatggaaaaaggggaaatggcccttggtcaaaacccaatcgtcgcttacatg
acttgggaagggtataacttcgaggatgccgttatcatgagcgaacgcttggtgaaagaa
gatgtctacacatctgttcacttggaagaattcgaatcagaaacacgcgataccaagtta
ggccctgaagaaattacccgtgaaattccaaacgtcggggaagatgctcttcgtgacttg
gatgaaacaggtattatccgtattggtgcggaagtaaaagaaggcgatatccttgtcggt
aaggtaacaccgaagggtgaaaaagacctttctgctgaagaacgtctccttcacgcgatc
tttggagataaatctcgtgaagtgcgtgatacttctcttcgtgtacctcacggtggagat
ggagtcgttcgtgatgttaagatctttacgcgtgcaaacggagatgaattgcaatctggt
gtgaacatgttggttcgtgtttacatcgcacaaaaacgcaagattcgcgtcggagataag
atggccggtcgtcacggaaacaaaggggttgtgtctcgtattgttccagttgaagatatg
ccttaccttccagacggtacaccggttgatatcatgttgaaccctcttggggtgccatca
cgtatgaatatcggtcaggttatggaacttcaccttggtatggcagctcgtaacttgggc
atccacatcgcaacaccagtctttgacggagcaagctcagaagacctctgggatactgtg
aaagaagctggtatggatagcgatgccaagaccatcctttacgatggacgtacaggtgag
ccgtttgacaaccgtgtttctgtcggtgtcatgtacatgatcaagcttcaccacatggtt
gatgataaactccatgcccgttcagtcggaccatactcaatggttacccaacaaccactc
ggagggaaagctcaatttggtggacaacgtttcggggaaatggaagtgtgggcccttgag
gcttatggtgcatcaaatgtccttcaagaaatcttgacttacaagtcagatgatgtcaac
ggacgtttgaaagcttatgaagcgattaccaaaggtaaaccaattccaaaaccaggtgta
ccagaatccttccgcgttcttgtcaaagaattgcaatctcttggtcttgacatgcgtgtc
ttggacgaagatgatcaagaagtggaacttcgtgacctcgatgaaggggaagacgatgat
gtgattcatgtggatgaccttgaaaaagcacgtgaaaaagcagccaaggaagcaaaagcg
gcctttgatgctgaagaatcagaaaaataa
DBGET
integrated database retrieval system
