Sorangium cellulosum So0157-2: SCE1572_21330
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Entry
SCE1572_21330 CDS
T02718
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scu
Sorangium cellulosum So0157-2
Pathway
scu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SCE1572_21330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scu03400
]
SCE1572_21330
Enzymes [BR:
scu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SCE1572_21330
DNA repair and recombination proteins [BR:
scu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SCE1572_21330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Rng_hyd_C
Motif
Other DBs
NCBI-ProteinID:
AGP36813
UniProt:
S4Y1N2
LinkDB
All DBs
Position
complement(6020253..6022316)
Genome browser
AA seq
687 aa
AA seq
DB search
MDGPRSSAAKGPTDGAAAAPRRTLTYADALEGARRGPFPDEVEPQLATLVTGPPQGDGWL
YEVKFDGYRMLAQLRGGRVTLLTRRGQDWTERFASVRDDLARLPAREAVLDGEIVIVGPD
GVTDFQALQNALSDGNDGREGRLMYFVFDLLYLDGRDLRDCAQVTRKRALEALLEEAPEE
GTLRYTEHLEEDGAAVFQHACKLGIEGVIAKRPEAPYRSGRGSSWLKVKCGKRQEFVIVG
FTEPTGARQGLGAILVGVNRSGKLAYAGKVGTGFTNKTRTTLRSRLESIERAKPAFAGAP
RMRGVHWVEPELLAEVQFSAWTRDGRLRHPSFEGLREDRTPESVTVEREQPPPAPPPRKA
AGAPSKAVSAARSKGAIEAPGKAPRGGRGGAERIEVAGTRLTNPDKVLYPAQGITKLALA
GYYAQIAEHMLPYVAKRLLTLVRCPAGQGKPCFFQRHEAEGLSEAIRRTLVEEDDGTRTY
LYIENTEGLVSLVQMGALEMHIWGSRVDRIEQPDMMVFDLDPAPELPWERVAEAAKTVRH
LLETLGLRSFVKTTGGKGLHVVVPIEARRRWDEVKPFTKAVADALVRFDPARYIATLSKA
KRTGKVFVDYLRNGRGATAVAPYSTRARPGAAVATPLSWDELDAPLDPASFTIETVPQRL
AAIADPWAELPTVRQSITSAMMKQVGL
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
gtggacggcccgcgctcgtccgccgcgaagggaccaacggacggcgccgccgcagccccg
cgccggacgctgacctacgcggatgcgctcgaaggcgcccggagagggccgttcccggac
gaggtcgaaccccagctcgcgacgctcgtcaccgggcccccgcagggcgacgggtggctc
tacgaggtcaagttcgacggctaccggatgctcgcgcagctccgcggcggccgcgtgacg
ctcctgacccgccgcggccaggactggaccgagcggttcgcgagcgtgcgcgacgacctc
gctcggttgccagcccgcgaagccgtgctggacggcgaaatcgtcatcgtcgggcccgac
ggcgtgaccgatttccaggcgctgcagaacgcgctcagcgacggaaatgacgggcgcgag
gggcgcctgatgtacttcgtgttcgacctgctctacctggacggccgcgatctccgcgac
tgcgcgcaggtcacccgcaaacgggcgctcgaggcgctgctggaggaagcgccggaggaa
gggaccctgcgctacacggagcacctcgaggaggacggcgccgccgtgttccagcacgcg
tgcaagctcgggatcgagggcgtcatcgcgaagcgcccggaggctccctaccggagcggg
cgcgggagcagctggctcaaggtgaagtgcggcaagcgccaggagttcgtgatcgtcgga
ttcaccgagccgaccggggcccgccaggggctcggggccatcctcgtcggcgtgaacagg
tcaggcaagctcgcctacgccggcaaggtgggcacgggcttcacgaacaagacgcgcacg
accctgcgcagccgtctcgagtcgatcgagcgcgccaagccggcctttgcaggggcgccg
cgcatgcgcggcgtccactgggtcgagcccgagctcctcgccgaggtccagttctccgcc
tggacgcgcgacgggcggctgcggcacccgtcgttcgagggcctccgcgaggaccgcacc
ccggagtcggtcaccgtcgagcgcgagcagcccccgccggcgccgccgccccgcaaggcg
gccggcgcgccgagcaaggcggtgagcgcggccaggagcaagggagcgatcgaggcgccg
ggcaaggcccctcgcggcggccgaggcggcgccgagaggatcgaggtcgcgggaacgcgg
ctgacgaaccccgacaaggtgctctatccggcgcaggggatcacgaagctcgctctcgcc
gggtattacgcgcagatcgccgagcacatgctgccctacgtcgctaagcggctgctcacg
ctcgtccgctgccccgcgggccagggcaaaccctgcttctttcagaggcacgaggccgag
gggctctcggaggccatccgtcggacgctcgtcgaagaggacgatggaacacgaacctat
ctctacatcgagaacaccgaagggcttgtgtcgctcgtgcagatgggggcgctcgagatg
cacatctgggggagccgcgtcgaccggatcgagcagccggacatgatggtcttcgacctc
gacccggcgccggagctcccgtgggagcgcgtggccgaggccgcgaagaccgtgcggcac
ctcctggagacgctggggctgcggagcttcgtcaagacgaccggcggcaaaggcctccac
gtggtggtcccgatcgaggcgcgcaggcgctgggacgaggtgaagccgttcacgaaggcc
gtggccgacgcgctcgtgcgcttcgatccggcgcggtacatcgcgacgctctcgaaggcc
aagcgcaccggcaaggtcttcgtcgactacctgcggaacgggcgcggcgcgaccgccgtg
gcgccgtactcgacccgcgcgcgccccggcgcagccgtggcgacgccgctctcgtgggac
gagctcgacgcgccgctcgatcccgcctcgttcaccatcgagaccgtgccgcagcgcctc
gcggccatcgcagatccgtgggccgagctcccgaccgtgcggcagtccatcaccagcgcc
atgatgaagcaggtcgggctctga
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