KEGG   Streptomyces sp. CdTB01: AS200_41235Help
Entry
AS200_41235       CDS       T04240                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
scx  Streptomyces sp. CdTB01
Pathway
scx03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:scx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AS200_41235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:scx03400]
    AS200_41235
Enzymes [BR:scx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AS200_41235
DNA repair and recombination proteins [BR:scx03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AS200_41235
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: ALV37783
UniProt: A0A0U3NMP2
LinkDB All DBs
Position
complement(9228324..9229337)
Genome map
AA seq 337 aa AA seqDB search
MTAGGSVDNSPVTLPLIPPMLATPGTLPPASQDARWAYETKQDGQRVVAYLEGNGRVRLR
ARSGEEITGAYPELRELGTALGATAAVLDGEVLALDEHGRADFQLLQSRMGLAHAPARAA
RQAAKVPAHLVLFDVMHLAGENLTALPYVRRRGLLEKLGLDGPFWSTPAALVGHGRQALS
ATREHGMEGLVCKRLDSVYEPGVRSRAWIKIRNMRSEDVVVGGWLAGKGRLSGLPGAVLV
GQRAAGRLRYVGGVGTGWSEAERVRLAGLLRDAGTTVCPFDPVPSVPGAHWVMPRLVGEV
RYSTRTRAGMLRQPSWLRLRPDLTPEEAAADFPADLL
NT seq 1014 nt NT seq  +upstreamnt  +downstreamnt
gtgaccgcgggcggcagtgtcgacaactcacccgtgaccctccccctgatcccgcccatg
ctcgcgacgccgggcacactgccgcccgcgtcgcaggacgcccgctgggcctacgagacc
aagcaggacggccagcgggtcgtggcctacctcgaagggaacggccgtgtgcggctgcgc
gcccggtcgggcgaggagatcaccggcgcgtacccggagcttcgggagctcggcacggcg
ctgggcgccacggccgcggtgctggacggggaggtgctggcgctggacgaacacggccgt
gccgacttccagttgctgcagtcccggatgggcctcgcacacgcgcccgcgcgggcggca
cgtcaggccgccaaggtccccgctcacctggtgctcttcgacgtgatgcacctggccggc
gagaatctcaccgctctaccctacgtccgccgccgggggcttctggagaagctggggctc
gacgggcccttctggtccacgcccgccgccctcgtcgggcacggccggcaggcgctgagc
gccacccgcgagcacggcatggagggcctggtctgcaagcggctggactcggtgtacgaa
cccggggtgcgctcccgcgcctggatcaagatccgcaacatgcgcagcgaggacgtcgtg
gtggggggctggctggcgggcaaggggcggctgtcggggctgcccggtgcggtcctggtg
ggacagcgggcggcggggcggctgcgctacgtcggcggggtgggcaccggctggagcgag
gccgagcgcgtccggctcgccgggctgctgcgggatgccgggaccaccgtgtgccccttc
gatcccgtcccctcggtgcccggcgcccactgggtgatgccccggctggtcggcgaggtc
cgctacagcacccggacccgcgccggcatgctgcgccagccctcctggctgcggctgcgc
ccggacctgacccccgaggaggcggcggccgacttcccggccgacctgctctga

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