KEGG   Streptomyces sp. CFMR 7: ABE83_34900Help
Entry
ABE83_34900       CDS       T04074                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
scz  Streptomyces sp. CFMR 7
Pathway
scz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:scz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ABE83_34900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:scz03400]
    ABE83_34900
Enzymes [BR:scz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ABE83_34900
DNA repair and recombination proteins [BR:scz03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ABE83_34900
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: ALC32370
UniProt: A0A0M4ECV1
LinkDB All DBs
Position
unnamed:complement(72812..73744)
Genome map
AA seq 310 aa AA seqDB search
MLATPGPLPSAAVEDRWAFEVKQDGQRAMIYLPGDGTVLLRARSGTDITSAYPELLPLAQ
ALGARSAVLDGEIVALDEQGRSDFERLQQRMGLAGAPARAARLAARVPVHLALFDVVHLD
GRPVTGVPYAERRELLEGLGLAGPGWSTPAAITGHGAQAWEMAKDAGLEGLIAKRLTSRY
EPGARSKAWVKIKVHRLADVVIGGWIPGRGRLTGLPGAVLVGERREGLLHYAGRVGTGWS
HTERTHLARLLQAAANDTCPFTQVPPVAGARWVLPQLVGEVRYTSRTHAGRLRHPSWHRL
RPDLTPDDLG
NT seq 933 nt NT seq  +upstreamnt  +downstreamnt
atgctcgccacacccggcccgctgccgtcggcggctgtggaggaccggtgggcattcgag
gtgaagcaggacggccagcgggccatgatctacctgccgggcgacggcacggtcctcctg
cgcgcacgatcaggtacggacatcacctccgcctaccccgaactcctccccctcgcccag
gccctcggcgcgcggagcgccgtgctggacggggagatcgtggcgctcgacgagcagggc
cgcagcgacttcgagcgcctccagcagagaatggggctcgccggtgcccccgcccgggcc
gcgcgcctggcggcccgggtgccggtgcacctggcgctcttcgacgtcgtccacctcgac
ggccgccccgtgaccggcgtgccgtacgcggagcggcgggaactgctggaaggcctcggg
ctggccgggcccggctggtcgacgcccgcggcgatcaccgggcacggcgcccaggcctgg
gagatggccaaggacgccgggctggaggggctgatcgcgaaacggcttacctcccggtac
gagcccggggcacggtcgaaagcctgggtgaagatcaaggtccaccgcctcgccgatgtc
gtgatcggcgggtggatccccggacgcggacggctgaccggtctgccgggtgccgtcctg
gtcggcgagcggcgcgaggggctgctgcactacgcgggccgcgtcggcaccggctggagc
cataccgaacgcacccacctcgcccgactcctccaggccgcagccaacgacacctgcccc
ttcacacaggtgcccccggtggccggggcccggtgggtactcccccagctcgtcggcgag
gtccgctacacctcccgcacccacgccggacgcctgcgtcacccctcctggcaccggcta
cgccccgacctcacccccgacgacctgggctga

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