Saccharophagus degradans: Sde_1489
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Entry
Sde_1489 CDS
T00335
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sde
Saccharophagus degradans
Pathway
sde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sde_1489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sde03019
]
Sde_1489
03400 DNA repair and recombination proteins [BR:
sde03400
]
Sde_1489
Enzymes [BR:
sde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sde_1489
Messenger RNA biogenesis [BR:
sde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sde_1489
DNA repair and recombination proteins [BR:
sde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sde_1489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABD80751
UniProt:
Q21KM8
LinkDB
All DBs
Position
complement(1917782..1919593)
Genome browser
AA seq
603 aa
AA seq
DB search
MTANTPLNILQHTFGYEAFRQPQQDIIDCVCQGGDALVIMPTGGGKSLCYQIPSLARSGV
GIVVSPLIALMEDQVNALKELGVNAGYLNSALDLRTAQQVEQDLISGELDLLYIAPERLV
QPRTLALLAQAPLALFAIDEAHCVAQWGHDFRADYLSLNILHERFPNVPRIALTATADQR
TQAEIVERLSLNNAQQFISGFDRPNIQYRIQQKDKPRNQLLNFLQLEQAGNAGIVYCLSR
KKVEETAAWLVTQGYDALPYHAGLPAATRQQNQMRFLRDDNVIIVATIAFGMGIDKPDVR
FVVHLDMPKSVEAYYQETGRAGRDGDAATALLLYGLEDVVKLQQMMATSEGSEEFKRHEQ
QRLSVMLGLCEITTCRRATLLRYFGDELPHPCGNCDNCLQPADTWDASEPVRMALSCVYR
SEQRFGASHVIDILRGSDNEKIRKFGHDKLSTYGIGKGLAITEWRSIFRQLVARGYLTVD
PNGYGSLILTESCRPILRGEEPIELRKDKATLKAPSVRKRLLDIDEADMGLWNALRRVRK
ELADEHGVPPYVIFHDATLKEMIEKRPMNDSELLCISGIGDRKLEQYGGEFLEVLREYEY
AQD
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccaatactccgctaaacatactgcaacacacctttggctacgaggctttccgc
caaccacagcaagatattatagattgcgtatgccaaggcggcgatgcccttgtcataatg
cccacagggggcggtaaatccctttgttaccaaattccctcgctagcacgaagcggcgta
ggtattgtggtgtcgccccttatcgcattaatggaagaccaagtaaatgcccttaaggaa
ttaggcgtaaacgccggctacttaaactccgcactcgatttacgaactgcgcaacaggta
gaacaagacctaataagtggcgaactagatttactttacattgccccagaacggctagtg
caaccgcgcaccctcgcccttttggcacaggcgccactcgccttatttgctatagatgaa
gcgcactgcgtggcgcaatgggggcacgattttcgcgccgactacttaagtttaaatata
ttgcatgagcggttccccaatgtgccgcgcattgcacttaccgccaccgccgaccaacgc
acgcaagcagaaattgtcgagcgcttaagcttaaacaatgcacaacaatttataagcggg
ttcgaccgacccaatattcaataccgcattcaacaaaaagataagcctcgcaaccaatta
cttaattttttacagttagagcaagcgggcaatgccggtattgtttactgcctgtcacgt
aaaaaagtagaagaaaccgctgcgtggttagttacccaaggctacgatgcgctgccctac
catgcggggttacccgcggctactcggcaacaaaatcaaatgcgttttttgcgcgacgac
aatgtaataattgttgcaaccattgcctttggtatgggtatagataaacccgacgtgcgt
tttgttgtgcacttagatatgcccaaaagtgtagaggcctactatcaagaaacaggccgc
gcagggcgcgatggcgacgccgcaaccgctttgcttttatacggcttagaagacgtggtt
aaactgcagcaaatgatggccacatcggagggcagcgaagagttcaaacgccacgaacaa
cagcgcctaagtgtcatgctgggcttgtgcgagataaccacctgccgccgcgcaacccta
ctgcgctattttggcgacgagctgccccacccttgcggtaattgcgacaactgcttgcaa
cccgccgacacctgggacgccagtgaacccgtacgcatggctttaagctgtgtttaccgc
agcgagcagcgctttggtgcatcgcacgttatagatattttgcgtggctccgacaacgag
aaaatacgtaaattcggccacgataaattatcaacttacggcataggtaaagggctagcc
attaccgaatggcgatctatttttaggcagctggttgcacgcggttacctaaccgtcgac
cctaatgggtacggtagtttgattcttacagaaagttgccgaccaatattacgcggcgaa
gaaccaatagaattacgcaaagataaagccaccttaaaagccccctctgtgcgtaaacgt
ttattagatattgatgaagccgacatgggattatggaatgccttgcgacgggtacgcaaa
gaattagccgatgaacacggcgtgcccccctacgtaatttttcacgatgccacgctaaaa
gaaatgatagaaaagcgccccatgaacgattcagagctcttgtgtatttctggtattggc
gacagaaaacttgaacagtacggcggcgagtttttagaagtgttacgcgaatatgaatac
gcgcaagactag
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