Seriola dumerili (greater amberjack): 111216873
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Entry
111216873 CDS
T05606
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04510
Focal adhesion
sdu04512
ECM-receptor interaction
sdu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111216873
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111216873
09142 Cell motility
04820 Cytoskeleton in muscle cells
111216873
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sdu04147
]
111216873
00536 Glycosaminoglycan binding proteins [BR:
sdu00536
]
111216873
Exosome [BR:
sdu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111216873
Glycosaminoglycan binding proteins [BR:
sdu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111216873
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111216873
NCBI-ProteinID:
XP_022594234
LinkDB
All DBs
Position
Unknown
AA seq
1667 aa
AA seq
DB search
MLLTSCSAPCSYTWLWCLLMMLTAPPAALGGDHTEPCAGRDCSTCQCFPAKGARGAPGGL
GQQGHQGPPGFPGPQGPPGEKGQRGDEGPTGAAGLKGDLGSVGVLGFPGLEGVPGHPGPA
GGPGFPGLDGCNGTRGQRGDPGLPGEQGRDGELGFPGLKGFPGDPAVYFIQYPGVPGDVG
PPGLPGLQGEQGLPGSVGGVGSDGLDGTNGLPGLPGSRGPPGEKGRSLPGQKGDEGDQGL
QGPPGPFEYVDPPEDLYIKGEKGHRGIKGVCGAEGLLGMDSLPGIKGEKGVPGFPGPRGF
SGIPGLLGEKGFKGIQGSPGLPGLIGREGPKGMMGDPGPKGLPQEVDVTHTGDVGGTGPQ
GLSGPEGDMGLMGMHGPPGAPGLSIPGPAGIVGQSGVPGSKGERGDPGQVYKDGPTPGEP
GKPGHPGLRGLKGEPGSPGRYCLPGAPGESGDLGQQGLTGDQGFPGFKGSNGACNCGPPF
ILRGPPGPVGDSGNQGFPGVPGAPGQRGEKGLPGDTGDTGEQGLGGFPGVKGLKGQKGDF
IVVDRLGEKGNIGQYGPPGRQGFSGRRGRDGLSGTPGNPGPQGDSFTSSPGDRGFPGFLG
PKGSSGPQGSPGADVGGAIGKRGPPGEPGAPGFLGPPGPKGTTGDTLPCVPRNPGPPGEK
GDTGNAGYTGLPGPSGFRGITGPDGIKGDKGQSGLPGLPGRQGPPGLVGDTGEEGSEGFS
YGGDPGSPGIPGYPGLRGPAGDSDVGPSGPIGFPGPLGSQGPKGVPGPPGIDGLQGVQGL
AGGPGAKGQRGQDGAPGITGPPGPSPGLCDIGKPGSKGPFGPQGPIGPPGFQGEKGETGE
VGPPGFGLQGPLGKPGSPGVPGYPGPQGPSGPIGDSGLPGPDGQKGLLGPQGTYGAQGAS
GQTGATGAPGWTGERGFNGRDGVQGCEGPKGEKGCKGPPGPPGDTMCVPIKGETGKPGPS
GIKGFPGPRGSKGVRGVTGKPGCPGSNGPPGIVGRPGLPGSCGMSGSPGPPGRQGPPGLI
GFPGPTGDQGDPGCPGKSGEPGHQGCTGQKGDKGDSVGSPGLPGNRGPPGDFGPTGPPGP
RGDPGRPGFLGPPGQKGCKGDPGHHGDPGSPGVTGPSGPGGRPGCPGLPGKAGADGPPGA
QGCPGLQGPPGPLGLHGLDGLKGVKGDMGTRGLGVQGPPGLQGLPGDKGPPGPSGPSGPS
QPGQPGPNGPPGPKGPPGSFGPPGKRGPNCQNPVSGPGGDPGCSGPDGEPGCVGDMGDPG
PNPPVLGDEGDNGDSGCRGQIGSKGSLGPKGLPGNPGDCGVKGMKGSQGLMGLPGNQGPR
GCTGQRGPPGPKGLDGPVGPKGERGGVSPCPTYPPPQPGPPGPPGPPGRLGEAGLQGENG
LKGFKGMRGNPGSEGPIGFVGPPGRDGNQGEPGLQGEQGVDGAKGDAGPVGDRGSPGISK
NLNSGFLLVRHSQSKNIPTCPLNMRPLWNGYSLLYLEGQEKAHTQDLGQAGSCMRVFSTM
PFSSCNMGACSYASRNDKSYWLSTTAAVPSIPVGGPSIEDHISRCVVCEAPSAPVALHSQ
TADQPDCPPKWTSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLTDFRAQPFVECQGPRGTC
HYFANIYSFWLTRVDTSTSTSNKPSTTLTEAWQQRGNIGRCNVCMRK
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgacttcctgctccgccccctgcagttacacctggctctggtgcctcctgatg
atgctgacagctcctccagcagctctcgggggtgaccacacagaaccgtgcgctgggcgg
gactgctccacctgccagtgttttccagccaaaggagcaaggggtgctccaggtggtctg
gggcagcagggccatcaggggcccccaggattcccaggtcctcaggggcctccaggagaa
aagggccaaagaggagatgaggggccaacaggagctgcaggactgaaaggagacctgggc
agtgtcggtgttcttggttttccgggtttagagggagtcccgggacacccgggccctgct
ggaggtccaggttttccaggtctggacggatgtaatgggaccagagggcagagaggagat
cctggacttcccggagaacaaggacgtgatggagaactgggttttccaggactgaaagga
tttccaggagatccagcagtgtacttcattcagtaccctggagtacctggagatgtgggg
ccccctggtcttcctggactgcagggtgagcagggtctccctggttcagtaggaggtgtg
ggttcagacggactggatgggaccaacggtctccctggtcttcctggttccaggggtcca
cctggagaaaaaggtcgatctctccctggacagaaaggagacgagggggatcagggcctc
caggggcccccggggccgtttgagtacgtcgaccctccagaggacctgtacatcaaagga
gaaaagggccatcgagggattaaaggagtctgtggagctgagggactgcttggcatggac
tctctcccaggaatcaaaggagagaaaggggttcctgggttccctgggcccagaggattt
tctggcatccccggtctgctcggagagaaaggattcaaggggattcaaggaagtccaggt
ctcccaggtctgattggacgagaaggtcctaagggcatgatgggagatccaggtcctaaa
ggcctccctcaggaggtagatgttacacacacaggtgatgttggaggcaccgggccccag
ggactgagcggccctgaaggagacatggggctgatgggaatgcatggtccccctggagcc
cctggcctctccatacctggtccagcaggtattgtaggtcagagtggagttccaggatcc
aaaggggagagaggagatccaggtcaggtctataaagatggacccacacctggagaacct
ggaaaaccaggacatcccggacttagaggattgaaaggagaaccaggaagtccaggtcgt
tactgtcttcccggggccccaggagaatcaggagacttgggtcaacagggactcacaggg
gatcagggattcccagggtttaaaggctctaatggtgcctgcaattgtggccctcctttc
atactaaggggcccccccggccctgtgggtgactcgggaaatcaggggtttccaggagtc
ccaggggccccagggcagagaggagagaaaggtttacctggagatactggagatactgga
gaacagggtctgggtggatttccaggcgtcaaagggttaaagggtcagaagggagatttc
attgtggtggatagattaggtgagaaaggaaacattggccagtacggccccccaggcaga
caaggattctctgggagaagaggacgtgatggactctctggcacccctggtaaccctggt
ccccagggtgacagttttaccagctctcctggagacagaggcttcccagggtttttaggg
ccaaagggatcatcaggacctcaaggctctccaggagcagatgtaggtggagcaatagga
aagcgtgggccccctggggagccgggagctccaggattcctgggtcccccagggccaaaa
gggactactggtgacactctgccctgtgtacccagaaaccccggccccccgggggagaag
ggagacactgggaacgcaggttacacaggactcccaggtccttcaggttttcgtggcatc
actggacctgatggaattaaaggagacaaaggacagtctggacttcctggactacctgga
cgacaaggacctccaggacttgttggagatactggagaagaaggatctgaaggcttcagt
tacggaggagatccaggctctccagggattccaggctatcctgggctcaggggcccagca
ggagactctgatgtcggaccctcaggacccattggcttcccaggaccactgggctctcag
ggacctaaaggagttcctggtccccccggcatagatggactacaaggagtccagggtctg
gccgggggccctggagcaaagggccagagagggcaggatggagccccaggtatcactggt
cccccaggtccttcacctggcctttgtgacataggaaaacccggttccaagggccccttt
ggccctcagggacccattggacccccaggttttcagggagagaaaggtgagactggggag
gtgggtcctccaggctttggccttcaaggccctttagggaaaccaggttctccaggtgtc
ccaggatacccggggccccagggcccctctggccccattggagactctggactgccagga
cccgacggtcagaaaggtctgttgggaccccaaggcacgtatggagcgcaaggggcttca
ggacagactggggccactggagctccaggatggacaggagagagagggttcaatggacga
gatggagttcaaggatgtgaagggccaaaaggagagaagggatgtaaagggcccccaggg
cctccaggagataccatgtgtgtcccaatcaaaggagagacaggaaaaccaggaccttcc
ggaatcaaaggtttccctggaccacgaggaagtaaaggtgtgcgaggcgttactggtaag
ccagggtgtccaggcagcaatggccccccaggtattgttggacgcccaggactgccaggt
tcctgcggtatgtcaggatcccctggaccacctggacgtcaaggacctccaggactcatt
ggcttccctggaccaactggagatcagggtgacccaggatgtccagggaaatctggagag
cctggtcaccaaggatgtacgggacagaaaggtgataaaggagactctgttggttctcct
ggcctacctggaaacagggggcctcctggagactttggccccacaggacctcctggacct
cgaggagatcccggaagacctggtttcctcgggcctccgggacagaaaggatgcaaagga
gatccaggccaccatggagacccaggttcaccaggtgtgaccggtccttcaggtcccgga
ggtcgtccaggttgtccaggtcttcctggtaaagcaggtgctgatggtcctccaggagcg
cagggctgcccgggactccaaggtcctcctggaccactgggacttcatggactggatgga
ctgaaaggagtgaaaggggacatggggaccagaggtctgggtgtgcagggtcctccgggt
ctccaaggtcttccaggggataagggtcctccaggtccttcaggtccctctggtccatcc
cagcctggacaaccaggacccaacggccccccaggacccaaaggacctccaggtagtttt
ggacctccaggtaaacgtggacccaactgtcaaaatccagtctcaggcccaggtggagat
cctggttgttctggaccagatggagagccaggttgtgttggggacatgggggatccaggt
cctaaccctccagtacttggggatgaaggggacaatggggactcaggatgccggggtcaa
attggctcaaagggatctctgggacccaaaggactgccaggcaaccctggagactgtgga
gtgaaaggtatgaaggggtcacaaggtctgatgggactacctggtaatcagggccctaga
ggttgtactggtcagagagggcctccaggaccaaaaggacttgatggaccagtgggtcca
aagggagaaagaggcggagtctccccgtgccctacttaccctcccccacagcctggtccc
ccgggcccccctggcccccctggtagacttggagaggctggcctccagggagaaaatggc
ctgaagggattcaaaggtatgagggggaatcctggatctgagggaccaataggctttgtg
gggcccccaggtcgagacggaaaccaaggagagccaggcctgcagggggagcaaggagta
gatggagccaaaggtgatgctggtccagtcggtgaccgcggttctcctggaatatccaaa
aacttgaactcgggcttcctgttggttaggcacagccaatcaaagaacattcccacctgt
ccattaaacatgaggcccctgtggaacggatacagtctgctctacttggagggccaggag
aaggctcacactcaggaccttggtcaagcggggtcgtgtatgcgagtcttttccaccatg
ccattctcctcctgtaacatgggagcctgctcttacgccagtcgtaatgataaatcctat
tggttgtcgacaacggcagccgtacccagcatacctgtgggcggaccctccattgaagat
cacatcagccgctgtgtagtgtgtgaagccccctccgcacctgtcgcactgcacagccag
accgccgaccagccagactgcccccccaagtggacgagcttgtggaccggatactccttc
ctcatgcatacaggtgccggtgatgagggcggcggccagtctctgacatcatcaggtagc
tgtctgacagacttcagggcccagcccttcgtggagtgtcaggggcctcgtggaacctgc
cactactttgccaacatctacagcttctggttaaccagagtggacacgagcacctccact
tccaacaagccctccaccacgctgaccgaggcctggcagcagagggggaacatcgggagg
tgcaacgtctgcatgaggaagtga
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integrated database retrieval system
