KEGG   Seriola dumerili (greater amberjack): 111222713Help
Entry
111222713         CDS       T05606                                 

Gene name
lig4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
sdu  Seriola dumerili (greater amberjack)
Pathway
sdu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    111222713 (lig4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sdu03400]
    111222713 (lig4)
Enzymes [BR:sdu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     111222713 (lig4)
DNA repair and recombination proteins [BR:sdu03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     111222713 (lig4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV DNA_ligase_A_C BRCT_2 BRCT RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 111222713
NCBI-ProteinID: XP_022602251
LinkDB All DBs
Position
Unknown
AA seq 914 aa AA seqDB search
MEGTSRSDAAGQLPVAAQVPFLHLCTTLEKIQKSKLRPDKSKILGDFIASWRKFHSALHK
DKPKTTDSFYPAMRLIVPSFERERMAYGIKENMLAKLYIDVLGLPKNGPEANKLLNYRAP
STSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAMNNASNQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVNTDLNKVCQQLHNPSVSL
SEVSIGLFSAFKPMLAGVANIRNVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGASALEGSLTPYIHNVFKSHVVNCILDGEMMAYNSSTENFMQKGSKFDIKRLM
EDSELQTCFCVFDVLLVNDQKLGKETLKKRYETIQTVFTPVKGRIHLVPQTEARTVQEVV
NALNDAIDSREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAIAEAPKPGEKPSLFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEAYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELDQFRSKASGKLASRHLHINDNELQKKKRKVAAKPKKVIGLIDHFKPQDLSGVTKET
DMFEDVEFCILNGTEDHPKAELEKGVARCGGIVVQNPGRDTYCVIAGMENMRVKNLILSN
QHDVVWPSWLLECLNQKEVVPWQPHHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQLRE
VFGRIGSGGVAAAAAAAVDLAQVEQRYSWDDLPTSMFRPFTVYMDSYADIGDPETAIPAT
CLDIRALEFRYHGGTVVQELEEGVSHVIITEETRLLDFKTLRRRFRKKFKIVKDSWVTDS
IEAGYLMNDDNYLV
NT seq 2745 nt NT seq  +upstreamnt  +downstreamnt
atggagggaacttccagaagtgacgctgctggccagctgcctgtcgcagcacaggttcct
ttccttcacctgtgtaccactttagagaaaatccagaagtctaaactccgtccagataaa
tccaagatccttggggatttcattgcatcatggaggaagtttcattctgccctccacaag
gacaagcccaaaacaacagactctttctacccagctatgcgcctcatagtcccctctttt
gaacgcgagcggatggcatatggcatcaaagagaacatgttagctaaactgtacatcgac
gtactaggccttccaaagaatggcccagaggccaataaactgctgaactaccgagctcca
tctacatcccaaggagaagctggagactttgcgggcatggcgtactttgtgctgaagaaa
cggtgcaccagccaaggcaacctcagcatcaaagaagtcaatgactttctggactcggtg
gccatgaacaacgccagcaatcagaaggatcttgtgaaaaagagtctcctgcacctcatc
acccagagctcggctctagagcaaaaatggctcatcagaatgatcctgaaggacatgaag
ctcggggtcagcaaagaaactgttctccaggttttccacccggacgctgctgagctctac
aatgtcaacacagacttgaacaaggtgtgccagcagctccacaacccgtctgtctcttta
agcgaagtctccattggactcttctctgccttcaagcccatgttggcaggtgtggctaac
atccgcaatgtggagaaacagatgggcaacagccccttttacatccagaccaagctggac
ggggagcgtattcagctgcacaaagatggagacgtgtacaaatactttagcaggaatgct
tttgagtacacgcagcagtttggagcatctgcacttgagggctcactaactccttacatc
cacaatgttttcaaaagccacgtcgtgaactgcatcctcgacggcgagatgatggcgtac
aactcaagcacagagaacttcatgcagaaagggagcaagttcgacatcaagaggctgatg
gaggactccgagttacagacgtgcttctgcgtgtttgacgtgttgttagtcaatgaccag
aagcttggcaaggaaacactgaagaaacgctatgagaccattcagacggttttcacccca
gtcaagggaaggattcacctggtgccacagaccgaagccagaaccgtgcaagaggtggtg
aacgccctcaatgacgccatagacagcagagaagaagggatcatggtgaaggatccgtta
tccatctacaaacctgacaagcgaggggagggatggctgaaaataaagccagaatacgtt
gatggattgatggatgagcttgacctgctgattgtcggtggctactgggggaaagggaga
cggggtggtatgatgtcccatttcttatgtgccattgctgaagctccaaagcctggcgag
aaaccttcacttttccacagcttctgccgcatcggctctggatacaccatgaaggagctg
tatgacctcggtttgaagctagccaagcactggaaagtgtaccggaagaacgacccgccg
gcgtccatcctgtgtggcacagagaagccagaagcctacatcgaaccctgcaactctgtc
atcatccaagtcaaggcggccgagatagtcgggagcgacatgtataaaaccaactgtacc
ctccgcttccccaggatcgagaagatccgtgatgacaaggagtggcaccagtgcatgact
ctggcagagctggatcagttccgcagcaaggcgtcggggaaactcgcctcgcgccacctt
cacatcaacgacaacgaactgcaaaagaagaagcgcaaggtggcagccaagcccaagaag
gtgatcgggctcatcgaccacttcaagcctcaggacctctccggggttaccaaggagacg
gatatgtttgaagatgtggagttctgcatcctgaacggcaccgaggatcaccccaaggcc
gagctggagaagggcgtggccaggtgtggaggaatcgtggttcaaaacccaggacgggac
acctactgcgtgattgccggcatggagaacatgcgtgtgaagaacctgattttgtccaac
cagcacgacgtggtttggccctcatggctgctggagtgcctgaaccagaaggaagtggtg
ccatggcaaccacaccacatgatccacatgtcgccctccaccagggaacactttgccaag
gagtacgacagctacggcgacagctactttgtggacacagacgagcagcagttgcgagag
gtcttcggcaggatcggcagtgggggcgtggcggcggctgcggctgcggccgtggacctc
gcgcaggtcgagcagcgttacagctgggacgaccttcccaccagtatgttcagacccttc
acagtttacatggacagctatgctgacataggagaccctgaaactgccatacctgccacc
tgtttggacatccgggcgctggagtttcgataccacgggggcacagtggtgcaggagttg
gaggaaggagtctctcacgtcataatcacagaggaaacacgacttctggatttcaagact
ctgaggcggcgctttaggaagaagtttaagatcgtaaaagactcatgggtgactgattca
attgaagcagggtatctgatgaatgacgataactacttggtttaa

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