KEGG   Seriola dumerili (greater amberjack): 111235420Help
Entry
111235420         CDS       T05606                                 

Gene name
hdac6
Definition
(RefSeq) histone deacetylase 6 isoform X1
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
sdu  Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:sdu01009]
    111235420 (hdac6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdu03019]
    111235420 (hdac6)
   04131 Membrane trafficking [BR:sdu04131]
    111235420 (hdac6)
   03036 Chromosome and associated proteins [BR:sdu03036]
    111235420 (hdac6)
Enzymes [BR:sdu01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     111235420 (hdac6)
Protein phosphatases and associated proteins [BR:sdu01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     111235420 (hdac6)
Messenger RNA biogenesis [BR:sdu03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     111235420 (hdac6)
Membrane trafficking [BR:sdu04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    111235420 (hdac6)
Chromosome and associated proteins [BR:sdu03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     111235420 (hdac6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP zf-UBP_var
Motif
Other DBs
NCBI-GeneID: 111235420
NCBI-ProteinID: XP_022619603
LinkDB All DBs
Position
Unknown
AA seq 1115 aa AA seqDB search
MQSGGSEMQSGPDPPGSGLKSVRRSPRLSPQGSSSKGKEEKKRGNSLQEVKRKGRMERSR
EDTEEDLNSRLQMLDLSSRSAASGTGLVYSETFTHHKNLWELSHVESPDRVTSIMEELER
RDLLSHCIRVEPREATEEELLLVHMKHYVDVMRSTQTMSESELHTLSEKYDSVYLHPESF
QVCVLAVGSVLQLVDQVMTSELRNGFAVIRPPGHHAQANQANGFCVFNNVAIAARYAQTT
HSVSRVLIVDWDVHHGQGIQYQFQEDPSVLYFSVHRYEQGSFWPHLPESDSQFVGSGRGE
GRNINLPWNQTRMTDADYIAAFQQLLLPVAYEFQPQLVLVSAGFDAAVGDEKGEMCVSPQ
CFHALTHMLMSLAEGRLVLALEGGYNLQSTAEGAAACVSALLGGACPPLTPPTAPSDSAL
QSISQTVTALYPHWASLQVLEGSSLAEGRVIRATTNEESTKQNSPAPSVATTTGLVYDER
MMEHLNMWDRHHPEQPQRISKIFSRHQQLGLVDRCQRIPARLATEEELTMCHSVQHIEQM
RATAVMKPRDLHKLGEEFNSIYINNQSFKSAQLSAGSCFSAVERILRGQVSNGVAIVRPP
GHHAERDSPCGFCFFNTAALVARHAQKISHHAPLRVLILDWDVHHGNGTQHMFEDDDSVL
YISLHRYDNGTFFPSSEDAAPDRVGVARGAGFNVNVAWSGGRMGDSDYLAAFHHVVMPIA
TEFNPGLVLVSAGFDAARGDPLGGYNVTPEGYAHLTHLLMSLAGGRVLLILEGGYNLSSI
SDSMAMCTSVLLGDPPPSLVTPFPPPHHSAVASINEVIRHHAPYWRSLRIHITESVRASL
PSPKHRGKRSSKGKGRKSEQRTSDKPPLPPTGPGDTTIERNLDQLTEGLASLDISQTSAN
HTPATSTPVGGARPKVRLSPEKVTCEGEVKAESNAATPEKSQSADSTPSQTQTVAMAASE
LAAIGDEAAGGAGMEGEAEGACGWSRPEMNVELLCGGQTDGSTLYVVDPLSWCPHLDAVK
PLPPSNIDVHLPCQDCGSDAENWICLTCYQVFCGRYVNEHMVTHGAVSEHPMVLSFSDLS
VWCYLCEAYVHNQILFEAKNAAHCAKFGEEIPPWS
NT seq 3348 nt NT seq  +upstreamnt  +downstreamnt
atgcagagcggtggatcagagatgcagtctggaccagatcctccaggatctggactgaag
tcagtcagaagatctcctcgtctgtctcctcagggcagcagcagtaaaggaaaggaggag
aagaaacgaggaaacagtctgcaggaggtgaagagaaaagggaggatggagaggagcaga
gaggatacagaggaggatctgaacagcagactgcagatgctggacctatccagcaggtca
gcagccagtgggacaggtttggtttactcagagaccttcactcatcataagaacctgtgg
gagctcagtcatgtagagagtccagacagagtgacgtccatcatggaggagctggagaga
cgagacctgctgtctcactgcatcagagtggagcccagagaagctacagaagaagaactg
ctgcttgttcacatgaaacattatgtggatgtgatgaggtcgactcaaacgatgtcagag
agtgaactacacactctttctgagaaatacgacagtgtttaccttcatcctgagtccttc
caggtgtgtgtgttggcggtgggctcagtcctccagctggttgatcaggtgatgacctct
gaactcagaaatggattcgctgtcatcagacctccaggtcatcatgctcaggccaaccag
gccaacggtttctgtgttttcaacaacgtggcaattgcagctcgatacgctcagaccaca
cactcagtcagcagggtgttgatagtggactgggatgttcatcatggtcaggggatccag
taccagttccaggaggaccctagcgtcctgtactttagtgtccataggtatgagcagggc
tctttctggccccacctcccagagtctgacagtcaatttgtcggtagtggacgaggcgaa
ggaagaaacatcaacctgccctggaaccagacaaggatgactgacgctgattacatcgct
gcttttcaacaactgctgctgcctgtagcctatgagtttcagcctcagctggttctggtc
tctgctggattcgatgctgcagtcggagatgagaagggggagatgtgtgtgagtcctcag
tgtttccatgctctgactcacatgttgatgagtttggctgaaggtcgactcgttctcgct
ctcgagggaggttataacctgcagtccacagcagagggcgctgcagcctgtgtcagtgct
ctgctgggaggagcatgtcctcctctgactcctcccacagctccatctgacagtgctctg
cagtccatctcccagacagtcactgctctgtatccacactgggcctctctacaagtactg
gaaggcagctcattggctgaaggcagagtcatcagagcaacaaccaatgaggagagcaca
aagcagaacagccccgccccctctgttgccacgacaacaggtctggtttatgatgagagg
atgatggagcacctgaacatgtgggacaggcatcatcctgaacagcctcagaggatctcc
aagatcttctccagacatcagcagctgggattggtcgatcgttgccaacggataccagct
cgcttagcaacagaggaggagctgaccatgtgtcacagtgtgcagcacattgagcagatg
agagccacagcagtgatgaagcccagagatctgcacaaactaggcgaagagttcaactca
atctacatcaacaaccagagcttcaagtctgctcagctgtctgctgggagctgcttcagt
gctgtggagaggatcctgagaggacaggtgagtaatggtgtggccatcgtccggcctcct
ggtcatcatgcagagagagactctccttgtggtttctgcttcttcaacaccgctgcactc
gtcgctcgccatgcccagaaaatctcccatcatgcaccgttgagagtcctcatcctggac
tgggatgttcaccacggcaacgggacacagcacatgttcgaggatgacgacagcgttctg
tacatctccctccatcgctatgacaatgggacattcttcccgtcttcagaggatgctgcc
cccgaccgtgtgggcgtggccagaggggcggggtttaatgtcaatgtggcatggagtgga
ggaagaatgggtgactctgactaccttgctgcttttcaccacgttgtcatgccaatcgct
accgagtttaaccctggtctggttctggtgtcggctgggttcgatgcagctcggggggat
ccgctaggtggatataatgtgaccccggagggatatgcccaccttacacacctgctgatg
tcactggctggggggagggtcctactcatcctggagggaggctacaacctgtcatccatc
tctgactccatggcaatgtgcaccagcgtgttgctaggagaccctcctccatccctggtg
actcccttcccccctccccatcacagtgccgtggcgtcgatcaatgaggttatccgacac
cacgccccctactggaggtccctgaggatacacatcacagagtctgttcgggcttccttg
ccatccccgaagcatcgtgggaaacgtagttctaaaggaaaaggcaggaagtcagagcag
agaacctcagacaaacctccgctaccccccacaggaccaggggacaccacgatagagcgc
aatctggaccaactcactgagggactggccagtttggacatcagtcagacctcagccaat
cacactcctgctacatccactccagtgggcggggccaggccgaaggtacgcctgagccca
gagaaggttacctgtgaaggtgaagtgaaggcggagtctaatgcagccacacctgagaag
agccaatcagcagacagcacaccatctcagactcagactgttgccatggcagcgtcagag
ttggctgctattggtgacgaggctgctggtggagcggggatggagggtgaggcagaggga
gcgtgtggttggtcgaggcctgagatgaatgtggagctgctgtgtggaggacagacagac
ggatctactctgtatgtggtcgaccctctgtcctggtgtcctcacctggatgccgttaag
cccctccccccctcgaatatagacgtccacctgccgtgtcaggactgtggctccgatgct
gagaactggatctgtctcacctgctaccaggtgttctgtggtcgttatgttaatgaacac
atggtgactcacggtgctgtgtctgaacacccgatggttctgagcttctctgatctctct
gtgtggtgttacctgtgtgaggcctacgtacacaaccagattctgtttgaggctaaaaac
gctgctcactgtgccaagtttggagaggagatccctccatggagctaa

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