KEGG   Seriola dumerili (greater amberjack): 111239385Help
Entry
111239385         CDS       T05606                                 

Gene name
lig1
Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sdu  Seriola dumerili (greater amberjack)
Pathway
sdu03030  DNA replication
sdu03410  Base excision repair
sdu03420  Nucleotide excision repair
sdu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111239385 (lig1)
   03410 Base excision repair
    111239385 (lig1)
   03420 Nucleotide excision repair
    111239385 (lig1)
   03430 Mismatch repair
    111239385 (lig1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sdu03032]
    111239385 (lig1)
   03400 DNA repair and recombination proteins [BR:sdu03400]
    111239385 (lig1)
Enzymes [BR:sdu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     111239385 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     111239385 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     111239385 (lig1)
DNA replication proteins [BR:sdu03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    111239385 (lig1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     111239385 (lig1)
DNA repair and recombination proteins [BR:sdu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     111239385 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     111239385 (lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     111239385 (lig1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 111239385
NCBI-ProteinID: XP_022624978
LinkDB All DBs
Position
Unknown
AA seq 1012 aa AA seqDB search
MQRSIASFFQPKSRDKDIQKKTADEPVIKPVKSPLKVQNGAVETDSPIKKVAKRSRQILD
SDDDEAPIVKEQVATKGQGDKETSSKKEKKDDVFKAVPTPMSPPPAPATPVTPATPATPA
SSASPGTPSTPNSISPTGAIKRKTARKMFPKRKLDESRSGSESQREEAEAKEEQGQQNKR
PRVETSASSAGNTSEPMEEGAKEEEVEKAVTEANSPDEEVENKKKEEGEKAMEEEQVENK
SSDEKEKKAEGAEKKNEAKEKTDDEKGLAVAKKEVVEKDTREGEESPKSQTAKKQKEAKE
QKDKEPAKKSPISSFFAPRKAAVKTEKPEKNEGEKKTSAERKSSAEESKDTKGEPTSGQT
DYNPSRPGYHPVDHACWKKGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSP
DDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAE
SSRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYFSR
SLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSLILK
QTYCEMPNYDVLIPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEAAFT
CEYKYDGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDTEAVA
WDREKKQIQPFQVLTTRKRKDVDATEIKVQVCVYAFDLLYLNGESLVRQPLSRRRALLKE
SFSEVEGEFMFARSIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLK
LKKDYLEGVGDTVDLCVIGAYMGKGKRTGTYGGFLLACYDDENEEFQSICKIGTGFKDED
LEQHYKFLKDHILPKPRAYYRVDQSAEPDMWLDAVQVWEVKCADLSLSPIYKAAMGMVDP
EKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq 3039 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgcagcatcgcctccttcttccagcccaagagcagagacaaggatattcagaag
aaaactgcagatgaaccagtgataaaacctgtcaagagtcctctcaaggtgcagaatggt
gccgttgaaactgattcacccatcaagaaggttgccaagcgcagccgtcaaatcctggac
agcgacgacgacgaggcaccaatagttaaagagcaagttgccaccaaaggacaaggagac
aaagaaacctccagtaaaaaagaaaagaaggatgatgtgtttaaggcagttcccaccccc
atgtctccaccaccagctccagccacccctgtaacaccggccactccagccaccccggcc
tcctcagcctcaccagggactcccagcacccctaactccatctccccgactggggccatt
aaacgcaagactgcgaggaagatgttccccaagaggaagcttgatgagagcaggagcggc
agtgagagtcagagagaggaggccgaggccaaagaggagcagggtcagcaaaataaacga
ccccgtgtggagaccagtgccagcagtgcagggaacaccagtgaacccatggaggaggga
gcaaaggaagaagaagttgaaaaggcagtgaccgaggctaacagcccagatgaggaggtg
gagaacaagaagaaagaagaaggagagaaggccatggaggaggagcaggtggagaataag
agctctgatgagaaagaaaagaaagctgagggggcggaaaagaaaaatgaagcaaaggag
aagacagatgatgagaaagggcttgccgttgccaagaaggaggtggttgaaaaggacacg
cgagagggagaagagagcccaaaaagtcaaacagcgaaaaaacagaaagaagcaaaagag
cagaaagataaggagccagccaagaaatcccccatcagcagtttctttgctcccaggaaa
gctgcagtgaagacggagaaaccagagaagaatgaaggggagaaaaagacaagtgcggag
aggaagagttcagcggaggagagtaaagacacaaaaggcgagccaacttcaggacaaaca
gactacaatccgtcccggccaggatatcatcccgtggaccacgcctgctggaagaagggc
caaaaagtgccgtacttggcggtggctcgcacctttgagaagattgaagaggactctggc
aggctgagaaacattgagacgctgtcgaacctgcttcgctctgtgctgctgctctctcca
gacgacctgctgtgctgtgtgtacctgtgtttgaaccagctgggtcctgcgtacctcggg
atggagcttggcgttggagaaacggtgctgatgaaagctgttgctcaagcaactgggcga
caattggacaaaatcaaagcagaggctcaggagaaaggagatttgggcctagtggccgag
agttcccgtagcaaccagcgcatgatgttccaaccggccagtctgacagcagggggcgtg
ttcaggaaattgaaggaaattgccagcatgagtggaaactcggccatgaataagaaaatc
gacatcatcaaaggcctctttgtggcatgccgcttttctgaggcccgctacttttccagg
tctcttgctgggaagctgaggataggcctggccgagcagagtgtcctatcagcactcagc
caggctgtgtgtttgaccccacctggacaaggtttccctcctgctgtgatcgacgcaggg
aaagggatgagcgctgagagcaggcgggcctggatcgaagagaagagtctcattctcaaa
cagacttactgcgagatgcccaattacgacgtcctcatccctgttctgctaaaagagggc
atagaccagctacccaatcactgcaagctcactccaggtgtaccgctgagacccatgttg
gctcaccccacaaagggtgtcggcgaggtgatgaagaagtttgacgaggcggcgttcacc
tgcgagtacaagtacgacggcgagcgtgcacagattcacattttggagagcggcgaggtt
cgaatattcagccgcaaccaggaagacaacaccagcaaataccccgatatcatctctcgc
attcccaaggtgaagaaggactcagtggtatcctgcgtcctggacacagaggctgtcgcc
tgggatcgtgagaagaaacagatccagcccttccaggtcctcaccactcgtaagagaaag
gacgtggatgccacggagatcaaagtgcaagtgtgcgtgtacgcctttgacctcctctat
ctcaatggcgagtccctggtgcgacagccgttgagtcggcgtcgggctctgctgaaagaa
agcttctcagaggtggagggagagtttatgttcgcccgatccattgactctgacaacaca
gacgccatcgctgagttcctggagcagtctgtccgagattcctgtgagggcctgatggtg
aagactctggagaaagatgccacctatgaaattgccaagcgctctcataactggctcaag
ctgaagaaagactacctggagggggtgggtgacacagtggacctgtgtgtgattggcgcc
tacatggggaaaggcaagaggacgggcacctatgggggcttcctgctggcgtgctatgat
gatgagaacgaggagttccagtccatctgcaagatcgggacaggcttcaaggatgaagat
ctggagcagcattacaagttcttaaaggaccacattctgccgaagccccgtgcctactac
cgcgtcgaccaatcagcagagcccgacatgtggctcgacgccgtgcaggtttgggaagtg
aagtgtgccgacctttcgctgtcacccatctacaaggctgccatgggaatggtggatcca
gagaagggcatttctctgaggttcccccgcttccttcggatcagagacgacaaaaaaccc
gaggacgctacgaccggagctcagattgcggatttgtacaagaagcagcagcagattcag
aatcagggggagaaagctgacccagaggactactactga

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