Streptomyces davaonensis: BN159_6379
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Entry
BN159_6379 CDS
T02518
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sdv
Streptomyces davaonensis
Pathway
sdv03030
DNA replication
sdv03430
Mismatch repair
sdv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN159_6379 (dnaE)
03430 Mismatch repair
BN159_6379 (dnaE)
03440 Homologous recombination
BN159_6379 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdv03032
]
BN159_6379 (dnaE)
03400 DNA repair and recombination proteins [BR:
sdv03400
]
BN159_6379 (dnaE)
Enzymes [BR:
sdv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BN159_6379 (dnaE)
DNA replication proteins [BR:
sdv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BN159_6379 (dnaE)
DNA repair and recombination proteins [BR:
sdv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BN159_6379 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
CCK30758
UniProt:
K4RBC4
LinkDB
All DBs
Position
7164042..7167581
Genome browser
AA seq
1179 aa
AA seq
DB search
MSKPPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHSAKKA
GVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANATGLHNLFKL
SSDAYAEGWLQKWPRMDKETISQWSEGLIASTGCPSGELQTRLRLGQYDEALKAAAEYQD
IFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEATAHDALLCI
QTGKNLSDPDRFRFDGTGYYLKSTDEMYAVDSSDAWQEGCRNTLLVAEQIDTTGMFQEKN
LMPKFDIPEGYTEVSWFREETMRGMNRRFPDGIPDDRMKQVEYEMDTIISMGFPGYFLVV
ADFIMWAKSQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPERISMPDVDI
DFDERRRVEVIRYVTEKYGSDKVAMIGTYGKIKAKNAIKDSARVLGYPYAMGDRLTKAMP
ADVLGKGIDLDGITNPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLVRQMGVHAAG
VIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIMDDAVKMVKS
NKGVELDLLALPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMDSHTNYALRKNKLQEITPIHKELEEPLEEVLAVTYGLIVYQEQVQKAAQIIAG
YSLGEADILRRVMGKKKPDELAKNFTIFQAGAQKNGYSDEAIQALWDVLVPFAGYAFNKA
HSAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSAIYLNECRRMGIKVLPPNVNES
VHNFAAQGDDVILFGLEAVRNVGTNVVESIIKSRKAKGKYASFPDYLDKVEAVACNKRTT
ESLIKAGAFDTMGHTRKGLTAHFDSMIDNVVAVKRKEAEGQFDLFGGMGEEESNEPGFGL
DVEFTTDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQLTGGEHADGAVV
TIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFPATYQLVSTQLVEDAVVFVKGRL
DKREDVPRLVAMELMVPDLSNAGTNAPVVLTIPAVKVTPPMVSRLGEILTHHKGDSEVRI
KLQGPTKTTVLRLDRHRVKPDPALFGDLKVLLGPSCLAG
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaagccgccgttcacgcacctgcacgtccacacccagtactcgctgctggacggt
gccgcgcggctgaaggacatgttcaacgcgtgcaatgagatgggcatgacgcacatcgcc
atgtccgaccacggcaacctccatggcgcgtacgacttcttccactccgcgaagaaggcc
ggagtcaccccgatcatcgggatcgaggcctatgtcgcccccgagtcccggcgcaacaag
cgcaagatccagtggggccagccgcaccagaagcgggacgacgtctccggttccggtggc
tacacccacaagacgatctgggcggccaacgcgacgggcctgcacaacctcttcaagctc
tcctccgacgcctacgccgagggctggctccagaagtggccccggatggacaaggagacc
atctcccagtggtccgaggggctcatcgcctccaccggctgcccctcgggcgagctccag
acccggctgcgcctcggccagtacgacgaggccctgaaggccgccgccgagtaccaggac
atcttcggcaaggaccgctacttcctggagctgatggaccacggcatcgagatcgagcgc
cgggtccgcgacggcctgctggagatcggcaagaagctcggcatccccccgctggtcacc
aacgactcgcactacacctacgcgcacgaggcgaccgcgcacgacgccctgctgtgcatc
cagaccggcaagaacctctccgaccccgaccgcttccggttcgacggcacgggttactac
ctgaagtccacggacgagatgtacgccgtcgactcctcggacgcctggcaggagggctgc
cgcaacaccctcctggtcgccgagcagatcgacaccacgggcatgttccaggagaagaac
ctcatgcccaagttcgacatccccgagggctacaccgaggtctcctggttccgcgaggag
accatgcgcggcatgaaccgccgcttcccggacggcatcccggacgaccggatgaagcag
gtcgagtacgagatggacaccatcatctcgatggggttcccgggctacttcctcgtcgtc
gccgacttcatcatgtgggccaagagccagggcatcgcggtcggccccggccgaggctcc
gcggccggctcgatcgtcgcctacgccatgggcatcaccgacctcgacccgatcccgcac
ggcctgatcttcgagcggttcctcaaccccgagcgcatctccatgcccgacgtcgacatc
gacttcgacgagcgcaggcgcgtcgaggtgatcaggtacgtcacggagaaatacggctcc
gacaaggtcgccatgatcggcacctacggcaagatcaaggcgaagaacgccatcaaggac
tccgcgcgcgtcctgggctacccgtacgcgatgggcgaccggctcaccaaggccatgcct
gcggacgtcctcggcaagggcatcgacctcgacggcatcaccaacccctcccaccctcgc
tacagcgaggcgggcgagatccgggcgatgtacgagaacgagccggatgtgaagaaggtc
atcgacaccgccaagggcgtcgagggcctggtccggcagatgggcgtgcacgccgccggc
gtcatcatgtccagcgagccgatcgtcgaccacgcgccgatctgggtgcggcacaccgac
ggcgtgaccatcacgcagtgggactacccccagtgcgagtcgctcggcctgctgaagatg
gacttcctcggcctgcgcaacctgacgatcatggacgacgccgtcaagatggtgaagtcc
aacaagggcgtcgaactcgacctgctggccctgccgctcgacgacccgacgaccttcgaa
ctcctccagcgcggcgacaccctcggcgtcttccagttcgacggcggccccatgcgctcc
ctgctgcgcctgatgaagcccgacaacttcgaagacatctccgccgtgtcggcgctctac
cgtcccggcccgatgggcatggactcgcacaccaactacgcgctgcgcaagaacaagctc
caggagatcaccccgatccacaaggagctggaggagcccctggaagaggtcctggccgtc
acctacggcctgatcgtctaccaggagcaggtgcagaaggccgcccagatcatcgccggg
tactcgctcggcgaggccgacatcctgcgccgcgtgatgggcaagaagaagcccgacgag
ctggcgaagaacttcaccatcttccaggccggcgcccagaagaacggctacagcgacgag
gccatccaggccctgtgggacgtgctggtcccgttcgccggctacgccttcaacaaggcc
cactcggccgcgtacggactggtctcgtactggacggcctacctgaaggccaactacccc
gccgagtacatggccgcgctgctgacctccgtcaaggacgacaaggacaagtcggcgatc
tatctcaacgagtgccgtcgtatgggcatcaaggtgctgccgccgaacgtcaacgagtcg
gtgcacaacttcgccgcccagggcgacgacgtgatcctcttcggcctggaggccgtgcgc
aacgtcgggacgaacgtcgtcgagtcgatcatcaagagccgcaaggccaagggcaagtac
gcctccttccccgactacctcgacaaggtcgaggccgtcgcctgcaacaagcggaccacg
gagtcgctgatcaaggcgggcgccttcgacacgatgggtcacacccgcaagggcctcacc
gcgcacttcgactcgatgatcgacaacgtggtcgcggtcaagcgcaaggaggccgagggc
cagttcgacctcttcggcggcatgggcgaggaggagagcaacgagcccggcttcggcctg
gacgtggagttcaccaccgacgagtgggacaagacctatctgctcgcccaggagcgggag
atgctcggtctgtacgtctccgaccacccgctcttcggcctggagcacgtgctgtccgac
aaggcggacgcgggcatcgcccagctcaccggaggtgagcacgcggacggcgcggtcgtc
accatcggcggcatcatctccggcctccagcgcaagatgaccaagcagggcaacgcctgg
gccatcgccaccgtcgaggacctggccggttccatcgagtgcatgttcttcccggccacc
taccagctcgtctcgacgcagctcgtcgaggacgcggtggtcttcgtcaagggccgcctg
gacaagcgcgaggacgtgccgcggctggtcgccatggagctgatggtgccggacctgtcg
aacgcgggcaccaacgccccggtcgtcctcaccatccccgcggtcaaggtcaccccgccg
atggtcagccgcctcggcgagatcctcacccatcacaagggcgacagcgaggtccggatc
aagctccagggcccgacgaagacgaccgtgctacggctggaccgccaccgggtgaagccg
gacccggcgctcttcggcgacctcaaggtgctgctcggcccgtcctgcctggccggctag
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integrated database retrieval system