KEGG   Streptomyces davaonensis: BN159_6379
Entry
BN159_6379        CDS       T02518                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
sdv  Streptomyces davaonensis
Pathway
sdv03030  DNA replication
sdv03430  Mismatch repair
sdv03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sdv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BN159_6379 (dnaE)
   03430 Mismatch repair
    BN159_6379 (dnaE)
   03440 Homologous recombination
    BN159_6379 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sdv03032]
    BN159_6379 (dnaE)
   03400 DNA repair and recombination proteins [BR:sdv03400]
    BN159_6379 (dnaE)
Enzymes [BR:sdv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BN159_6379 (dnaE)
DNA replication proteins [BR:sdv03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BN159_6379 (dnaE)
DNA repair and recombination proteins [BR:sdv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BN159_6379 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon DUF655
Other DBs
NCBI-ProteinID: CCK30758
UniProt: K4RBC4
LinkDB
Position
7164042..7167581
AA seq 1179 aa
MSKPPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHSAKKA
GVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANATGLHNLFKL
SSDAYAEGWLQKWPRMDKETISQWSEGLIASTGCPSGELQTRLRLGQYDEALKAAAEYQD
IFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEATAHDALLCI
QTGKNLSDPDRFRFDGTGYYLKSTDEMYAVDSSDAWQEGCRNTLLVAEQIDTTGMFQEKN
LMPKFDIPEGYTEVSWFREETMRGMNRRFPDGIPDDRMKQVEYEMDTIISMGFPGYFLVV
ADFIMWAKSQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPERISMPDVDI
DFDERRRVEVIRYVTEKYGSDKVAMIGTYGKIKAKNAIKDSARVLGYPYAMGDRLTKAMP
ADVLGKGIDLDGITNPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLVRQMGVHAAG
VIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIMDDAVKMVKS
NKGVELDLLALPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMDSHTNYALRKNKLQEITPIHKELEEPLEEVLAVTYGLIVYQEQVQKAAQIIAG
YSLGEADILRRVMGKKKPDELAKNFTIFQAGAQKNGYSDEAIQALWDVLVPFAGYAFNKA
HSAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSAIYLNECRRMGIKVLPPNVNES
VHNFAAQGDDVILFGLEAVRNVGTNVVESIIKSRKAKGKYASFPDYLDKVEAVACNKRTT
ESLIKAGAFDTMGHTRKGLTAHFDSMIDNVVAVKRKEAEGQFDLFGGMGEEESNEPGFGL
DVEFTTDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQLTGGEHADGAVV
TIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFPATYQLVSTQLVEDAVVFVKGRL
DKREDVPRLVAMELMVPDLSNAGTNAPVVLTIPAVKVTPPMVSRLGEILTHHKGDSEVRI
KLQGPTKTTVLRLDRHRVKPDPALFGDLKVLLGPSCLAG
NT seq 3540 nt   +upstreamnt  +downstreamnt
gtgtcaaagccgccgttcacgcacctgcacgtccacacccagtactcgctgctggacggt
gccgcgcggctgaaggacatgttcaacgcgtgcaatgagatgggcatgacgcacatcgcc
atgtccgaccacggcaacctccatggcgcgtacgacttcttccactccgcgaagaaggcc
ggagtcaccccgatcatcgggatcgaggcctatgtcgcccccgagtcccggcgcaacaag
cgcaagatccagtggggccagccgcaccagaagcgggacgacgtctccggttccggtggc
tacacccacaagacgatctgggcggccaacgcgacgggcctgcacaacctcttcaagctc
tcctccgacgcctacgccgagggctggctccagaagtggccccggatggacaaggagacc
atctcccagtggtccgaggggctcatcgcctccaccggctgcccctcgggcgagctccag
acccggctgcgcctcggccagtacgacgaggccctgaaggccgccgccgagtaccaggac
atcttcggcaaggaccgctacttcctggagctgatggaccacggcatcgagatcgagcgc
cgggtccgcgacggcctgctggagatcggcaagaagctcggcatccccccgctggtcacc
aacgactcgcactacacctacgcgcacgaggcgaccgcgcacgacgccctgctgtgcatc
cagaccggcaagaacctctccgaccccgaccgcttccggttcgacggcacgggttactac
ctgaagtccacggacgagatgtacgccgtcgactcctcggacgcctggcaggagggctgc
cgcaacaccctcctggtcgccgagcagatcgacaccacgggcatgttccaggagaagaac
ctcatgcccaagttcgacatccccgagggctacaccgaggtctcctggttccgcgaggag
accatgcgcggcatgaaccgccgcttcccggacggcatcccggacgaccggatgaagcag
gtcgagtacgagatggacaccatcatctcgatggggttcccgggctacttcctcgtcgtc
gccgacttcatcatgtgggccaagagccagggcatcgcggtcggccccggccgaggctcc
gcggccggctcgatcgtcgcctacgccatgggcatcaccgacctcgacccgatcccgcac
ggcctgatcttcgagcggttcctcaaccccgagcgcatctccatgcccgacgtcgacatc
gacttcgacgagcgcaggcgcgtcgaggtgatcaggtacgtcacggagaaatacggctcc
gacaaggtcgccatgatcggcacctacggcaagatcaaggcgaagaacgccatcaaggac
tccgcgcgcgtcctgggctacccgtacgcgatgggcgaccggctcaccaaggccatgcct
gcggacgtcctcggcaagggcatcgacctcgacggcatcaccaacccctcccaccctcgc
tacagcgaggcgggcgagatccgggcgatgtacgagaacgagccggatgtgaagaaggtc
atcgacaccgccaagggcgtcgagggcctggtccggcagatgggcgtgcacgccgccggc
gtcatcatgtccagcgagccgatcgtcgaccacgcgccgatctgggtgcggcacaccgac
ggcgtgaccatcacgcagtgggactacccccagtgcgagtcgctcggcctgctgaagatg
gacttcctcggcctgcgcaacctgacgatcatggacgacgccgtcaagatggtgaagtcc
aacaagggcgtcgaactcgacctgctggccctgccgctcgacgacccgacgaccttcgaa
ctcctccagcgcggcgacaccctcggcgtcttccagttcgacggcggccccatgcgctcc
ctgctgcgcctgatgaagcccgacaacttcgaagacatctccgccgtgtcggcgctctac
cgtcccggcccgatgggcatggactcgcacaccaactacgcgctgcgcaagaacaagctc
caggagatcaccccgatccacaaggagctggaggagcccctggaagaggtcctggccgtc
acctacggcctgatcgtctaccaggagcaggtgcagaaggccgcccagatcatcgccggg
tactcgctcggcgaggccgacatcctgcgccgcgtgatgggcaagaagaagcccgacgag
ctggcgaagaacttcaccatcttccaggccggcgcccagaagaacggctacagcgacgag
gccatccaggccctgtgggacgtgctggtcccgttcgccggctacgccttcaacaaggcc
cactcggccgcgtacggactggtctcgtactggacggcctacctgaaggccaactacccc
gccgagtacatggccgcgctgctgacctccgtcaaggacgacaaggacaagtcggcgatc
tatctcaacgagtgccgtcgtatgggcatcaaggtgctgccgccgaacgtcaacgagtcg
gtgcacaacttcgccgcccagggcgacgacgtgatcctcttcggcctggaggccgtgcgc
aacgtcgggacgaacgtcgtcgagtcgatcatcaagagccgcaaggccaagggcaagtac
gcctccttccccgactacctcgacaaggtcgaggccgtcgcctgcaacaagcggaccacg
gagtcgctgatcaaggcgggcgccttcgacacgatgggtcacacccgcaagggcctcacc
gcgcacttcgactcgatgatcgacaacgtggtcgcggtcaagcgcaaggaggccgagggc
cagttcgacctcttcggcggcatgggcgaggaggagagcaacgagcccggcttcggcctg
gacgtggagttcaccaccgacgagtgggacaagacctatctgctcgcccaggagcgggag
atgctcggtctgtacgtctccgaccacccgctcttcggcctggagcacgtgctgtccgac
aaggcggacgcgggcatcgcccagctcaccggaggtgagcacgcggacggcgcggtcgtc
accatcggcggcatcatctccggcctccagcgcaagatgaccaagcagggcaacgcctgg
gccatcgccaccgtcgaggacctggccggttccatcgagtgcatgttcttcccggccacc
taccagctcgtctcgacgcagctcgtcgaggacgcggtggtcttcgtcaagggccgcctg
gacaagcgcgaggacgtgccgcggctggtcgccatggagctgatggtgccggacctgtcg
aacgcgggcaccaacgccccggtcgtcctcaccatccccgcggtcaaggtcaccccgccg
atggtcagccgcctcggcgagatcctcacccatcacaagggcgacagcgaggtccggatc
aagctccagggcccgacgaagacgaccgtgctacggctggaccgccaccgggtgaagccg
gacccggcgctcttcggcgacctcaaggtgctgctcggcccgtcctgcctggccggctag

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