KEGG   Shigella dysenteriae Sd197: SDY_2036
Entry
SDY_2036          CDS       T00306                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
sdy  Shigella dysenteriae Sd197
Pathway
sdy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sdy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SDY_2036 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sdy03400]
    SDY_2036 (mfd)
Enzymes [BR:sdy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SDY_2036 (mfd)
DNA repair and recombination proteins [BR:sdy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      SDY_2036 (mfd)
SSDB
Motif
Pfam: TRCF DEAD MFD_D3 UvrB_inter Helicase_C CarD_TRCF_RID ResIII UB2H ERCC3_RAD25_C RecG_dom3_C
Other DBs
NCBI-ProteinID: ABB62131
ShiBASE_China: SDY2036
UniProt: Q32EX4
LinkDB
Position
1846016..1849462
AA seq 1148 aa
MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS
QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMRRVCPH
SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY
RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPIDKAAIELFRSQWRDTFEVKRD
PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL
ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD
LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD
RGRYLMIGAAEHGFVDKVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGVEENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHEREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF
KDLGLLIVDEEHRFGVRHKERIKAMRANVNILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEATASLEDLGAGFALATHDLEIRGAGELLG
EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR
ELEENTIA
NT seq 3447 nt   +upstreamnt  +downstreamnt
atgcctgaacaatatcgttatacgctgcccgtcaaagcgggtgagcagcgtctgctgggc
gagttaaccggcgctgcctgcgcgacgctagtggcggaaattgccgaacgtcacgccggt
ccggtggtactcattgcaccagatatgcaaaatgctctgcgtttgcatgatgaaatcagc
cagttcaccgatcagatggtgatgaatctggcggactgggaaaccctcccttacgacagt
ttttcgcctcatcaggacattatctcctcgcgcctttccaccctttaccagctaccgacg
atgcagcgtggcgtactgattgttccggtgaatacgcttatgcggcgcgtttgcccgcac
agttttctccacggtcatgcactggtaatgaaaaaaggtcagcgcctgtcacgagatgca
ttgcgaacccaactggacagcgccggttatcgccatgttgaccaggtaatggagcacggc
gaatacgccacgcgcggcgcgttgctggatctcttcccgatggggagtgagctaccttat
cgtcttgatttctttgatgatgaaatcgacagtctgcgggtgtttgacgtcgacagccag
cgcacgctggaggaagtagaagcgatcaatctgttgcctgcgcacgaatttccgatcgat
aaagcggcgattgaactgttccgcagccagtggcgcgataccttcgaagtgaagcgcgac
ccggaacatatttatcagcaagtgagtaaaggcacattacctgccgggatcgagtactgg
cagccgctattcttcagcgaaccactgccgccactgttcagttattttcctgccaatacg
ctgctggtgaatactggcgatctggaaaccagtgccgaacgtttccaggctgacacgctg
gcgcgttttgagaatcgcggcgtcgatccgatgcgcccactgttgccaccacaatcgctc
tggctgcgggtggacgagctcttctcagagctgaaaaactggccgcgggtgcagctaaaa
actgaacatttaccgacaaaagccgcgaatgccaatttaggtttccagaaactgccagac
ctggccgttcaggcacaacaaaaagcgccgctggatgcgctgcgtaagttcctcgagact
ttcgatggtccggtggtgttctcggtagaaagtgaaggtcgccgtgaagcgctgggtgaa
ctgctcgcgcgaattaaaattgctccgcaacgcattatgcgtcttgatgaagccagcgac
cgtgggcgttatctgatgattggcgctgccgaacatggttttgtcgataaggtgcgtaac
ctggcgctgatttgcgaaagcgatctgctcggtgaacgcgttgcccgccgtcgtcaggac
tctcgccgcaccatcaaccccgatacactgatccgcaacctcgcggagctgcatattggt
cagccggtggtccatctggagcacggcgttggtcgttatgccggaatgaccacgctcgaa
gctggaggcattactggcgagtatttgatgctcacctatgccaacgacgccaaactgtat
gttccggtgtcgtcactgcatctgattagccgttacgcaggtggcgtggaagaaaacgcc
ccgctgcataaacttggcggcgatgcgtggtcacgcgcgcggcagaaagcggcggaaaaa
gtgcgtgatgtggcggcggaattgctggatatctacgcgcaacgcgccgccaaagagggc
ttcgcgtttaaacacgagcgtgagcagtatcagttgttctgcgacagcttcccgtttgaa
accacgccggatcaggcgcaggccattaatgcggtacttagcgacatgtgtcagccactg
gcaatggatcgtctggtgtgcggcgatgttggctttggtaaaacagaagtggcgatgcgc
gccgctttcctggcagtagataaccacaagcaggtggcggtgctggtgcctaccaccctt
ctcgcgcagcagcattacgacaacttccgcgaccgtttcgccaactggccggtacgtatc
gaaatgctctcccgtttccgcagcgccaaagagcagacgcaaatccttgcggaagtggcg
gaagggaaaatcgatattctgatcggtacgcacaaactgctgcaaagtgacgtcaagttt
aaagatttaggcctgctgattgtcgatgaagaacaccgcttcggggtgcgtcataaagag
cgcattaaagcgatgcgcgcgaacgtgaatattctgacgcttactgcaacgccgatccca
cgtacgctgaatatggcaatgagcggaatgcgtgacctgtcgattatcgccacgccgccc
gcccgtcgtctggcagttaaaacctttgtccgtgagtatgacagcctggtggtccgggag
gcgatcctgcgtgaaattttgcgcggaggacaggtttattatctctacaatgatgtggaa
aacattcagaaagccgccgaacggctggcagaactggtgccagaagcgcggatcgccatc
ggtcacgggcagatgcgcgagcgcgaactggaacgggtgatgaatgatttccatcatcaa
cgtttcaacgtgctggtttgtacaaccattatcgaaaccgggatcgacatcccgacagcc
aacaccattatcattgaacgcgcggatcacttcggtctggcgcagctgcaccagttacgc
ggtcgcgtcggacgttcgcatcatcaggcatatgcatggttgctgacaccgcatccaaaa
gcgatgactaccgatgcacaaaaacgtcttgaagcgactgcctcgctggaagatctcggg
gcaggttttgcgctggcaacgcacgatctggagattcgcggcgcgggtgaactgcttggc
gaagaacaaagcggctcaatggaaaccatcggtttctcgctgtatatggagttgctggaa
aacgccgtcgatgcactgaaagccggacgcgagccgtcgctggaagatctcaccagccag
caaacagaagtcgagctgcggatgccgtcgctattgccagatgatttcatccctgacgtg
aacacgcgtctgtcgttctacaaacgtattgccagcgccaaaacggaaaacgaactggaa
gagatcaaagtcgagcttatcgatcgcttcggcctgctgccggatccggcgcgtaccctg
ctggatattgcccgtctgcgccaacaagcgcagaaactggggatcaggaagctggaaggt
aatgagaaaggcggggtgatcgaatttgccgagaagaatcacgttaatccagcctggttg
attggtttgctgcaaaaacagccgcagcattaccgccttgatggtccgacgcgcctgaaa
tttattcaggatttgagcgagcggaaaacgcgtatcgaatgggttcgccagtttatgcgt
gaactggaagagaacacgatcgcttaa

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