Salmonella enterica subsp. enterica serovar Typhimurium ST4/74: STM474_1717
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Entry
STM474_1717 CDS
T01760
Symbol
yciR
Name
(GenBank) RNase II stability modulator
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
seb
Salmonella enterica subsp. enterica serovar Typhimurium ST4/74
Pathway
seb02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
seb00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
STM474_1717 (yciR)
Enzymes [BR:
seb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
STM474_1717 (yciR)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
GGDEF_2
PAS_4
Motif
Other DBs
NCBI-ProteinID:
ADX17402
UniProt:
E8XKR7
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All DBs
Position
1753386..1755377
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AA seq
663 aa
AA seq
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MVRMMKQIQEQTALNPLHSHWRLADDRNVLYLSPTGETDAEKTVELSPEQAGRIREITAI
TSSLLITLLIEKQVTAVHLVGRKINNREWAGSLATWPDTPAVSPTQAQELSFAEQIVSEA
NSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMSRREAVASRHYIENFFRNG
NAYEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFLICAGTDITEERRAQERLRILANTD
TVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFKKINDAYGHMFGDQLLQAVSLAL
LSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRILTRLRQPFRIGLIEVYTGCAIGI
SLAPRHGQDSESLIRTADTAMYNAKEGGRGQFCVFSPEMNQRVFDYHWLDTNLRKALEND
QLLIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLEFISYAEESGLIVPLGRWVILDVV
RQIAKWRDKGINLRVAVNFSARQLADQTLFTALKQALYDLNFEYCPIDVELTESCLIEND
TLALSVIQQFSQLGAQIHLDDFGTGYSSLSQLARFPIDAVKLDQAFVRDIHKQPLSQSLV
RAIVAVAQALNLQVIAEGVENAKEDAFLTKNGVNERQGFLFAKPMPAVSFERWYKRYQTK
KMR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggtacgcatgatgaaacagattcaggaacaaacggcgctaaatccccttcactctcac
tggcgtctggctgatgaccgcaacgtgctgtatctctccccgacaggtgaaacggatgca
gaaaaaacggttgagctatcgccggaacaagccgggcgtatccgggaaataacggcgatt
acgtccagtctgctgataacgttgttgatagaaaaacaggttaccgctgtgcacctggta
ggccgtaagattaataaccgtgaatgggctggcagcctggcaacctggcctgatacgcct
gccgtctcgccaacgcaggcgcaggagctctcttttgccgagcaaatcgtatcagaagcc
aactcagtcattgcgatactggatagtcggggaaaaatctgtcgatttaatcggttatgc
gaagagtacacaggcttaaaagagcgagatgtaattggtcaaagcgtctttaaattattt
atgagccgccgggaggcggttgcctcccgacactacattgagaatttttttcgcaatggc
aatgcctatgaaatcgaacgctggataaagacccgtaaaggccaacgcctgttcttattt
cgtaataaattcgtccataacggtagcggaaaaaacgaaattttcctgatctgcgcaggc
acggatatcaccgaagaaaggcgggctcaggagcgtttacgcatactggcgaatacagac
accgtcaccggcctgcccaatcgcaatgctattcatgaatttattaatcatgctattgcc
tcggctggcgagtcgcaggtgggtatcgtttatctcgatctggataacttcaagaaaatt
aatgacgcctatgggcatatgtttggcgatcagctcttacaggccgtttcgctggcgctg
ttgagttgtctggaggaagatcaattgctggccagactggggggagatgaattcattgtc
ctcgctgcccatacgtctcaggccgcgctggaagcagtagcctcacgaatccttacccgt
ctgcggcaaccgtttcgtattggactcattgaagtttacacgggatgcgccattggcatt
tcgttggccccccggcacggacaggacagcgaaagtctcattcgcactgccgacaccgca
atgtataacgccaaagaaggcggccgcggtcagttctgcgttttttcgccggaaatgaat
cagcgcgtatttgactatcactggctggatacaaacctgcgaaaagcgctggaaaacgac
cagttacttattcactatcagcccaaaattacctggcgcggcgaagtacgtagcctggaa
gcgctggtacgctggcaatcgccggaacgcggattaattccgccgctggagttcatctca
tacgccgaagagtcaggactcatcgtcccgctgggccgctgggtgattctggatgtagtt
cgccagattgcgaaatggcgcgataaggggattaacttgcgcgtagccgttaacttttcg
gcgcgacaactggccgaccagacgctttttactgcgcttaaacaggctttgtacgatctg
aattttgagtattgcccgatcgatgtcgagctaacggaaagctgcctgatcgaaaacgac
acgctggcgctatcggttatccagcaatttagtcagctcggcgcccagattcatctggat
gattttggcacagggtattcttcgctttctcaactcgcccggttccctattgatgccgtt
aaactggatcaggctttcgtcagagatatccataagcaaccgctgtcgcaatctctggtt
agggcgattgtcgcggtggctcaggcgctaaatttacaagtgattgccgaaggtgtagaa
aatgctaaagaagatgccttcctgacaaaaaacggcgtcaatgaacgacagggcttttta
ttcgccaaacctatgcccgccgtttcttttgaacgctggtacaaacgttatcagacgaaa
aaaatgcgttaa
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