Sphingomonas echinoides: B18_04490
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Entry
B18_04490 CDS
T06681
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sech
Sphingomonas echinoides
Pathway
sech03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sech00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B18_04490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sech03021
]
B18_04490
03400 DNA repair and recombination proteins [BR:
sech03400
]
B18_04490
Enzymes [BR:
sech01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B18_04490
Transcription machinery [BR:
sech03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B18_04490
DNA repair and recombination proteins [BR:
sech03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B18_04490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
DUF3150
Motif
Other DBs
NCBI-ProteinID:
QLD73206
LinkDB
All DBs
Position
complement(987511..991710)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVHELLNAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEGRGMATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVMGLYYMTREAINAKGEGMAFADLQEVDRAYRSG
QASLHARVKVRINEKIKGEDGQLTANTRIVDTTVGRALLFQVVPAGLPFDVVNQSMKKKA
ISKLINHCYRVVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIINAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVVDREGKEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMSPHIEGGDVVEPLGERVL
GRVIARDVFKPGSDEVIVPAGTLIDEKWVDFLEVMSVDEVVVRSPITCETRHGICAMCYG
RDLARGHRVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADNVQVKNGGTIRL
HNLKHVVRADGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEGDKVDPGAIVAKW
DPHTHPIVTEVDGTVAFVGMEEGITVKRQTDELTGLTNIEVMDPKDRPAAGKDIRPAVKL
IDAAGKDLLLPGTDVPAQYFLPANALVNLTDGAKVSIGDVVARIPQETSKTRDITGGLPR
VADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSNPHDILRLLGVSSLAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEVSESGDSSFIKGDQVELTQVLEENEQLGTEDKFPAKYERVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDFLRGLKENVVVGRLIPAGTGLAYHSERKRQRDLGKPQR
VSASEAEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgcttaatctgttgaaaaaccagggtcaaatcgaagagttcgatgccatc
cgtattggcctggcttcgcccgagatgattcgttcctggtctttcggcgaagttaaaaag
ccggaaaccatcaactaccgtaccttcaagccggagcgcgacggcctgttctgcgccaag
atcttcggcccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggtgtgatctgcgagaagtgcggcgtggaagtcgccctggccaaggtgcgccgcgag
cgcatgggccacatcgagctggcttcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgctggacatgaccctgcgcgatatcgagcgcgtgctctat
ttcgagagctacgtggtgatcgatccgggcatgaccaccctggaaaagggccagctgctg
aacgacgagcaatacttcgaggccctcgaagagttcggtgacgatttcgatgctcgcatg
ggcgccgaagccgttcacgaactgctcaacgccatcgatctggagcacgagatcggccgc
ctgcgcgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagccttccagggctccggcaacaagcctgagtggatggtcctgacc
gtcctgccggtgctgccgccggacctgcgtccgctggttccgctggatggcggtcgcttc
gcgacttccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgacctggccgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagccgtcgacgccctgctcgacaacggccgtcgcggtcgcgccatcaccggctcgaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcaaggtcgcttccgtcag
aacctgctcggcaagcgcgtggactactccggtcgttccgtgatcaccgtgggcccgacc
ctgcgcctgcaccagtgcggtctgccgaagaagatggccctggagctgttcaagccgttc
atcttcggcaagctggaaggtcgtggtatggccaccaccatcaaggccgccaagaaaatg
gtcgagcgcgagctgcccgaggtctgggacgttctcgccgaagtcatccgcgagcatccg
gttctcctgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtc
ctcatcgaaggcaaggcgatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtccacgttccgctgaccctcgaggcccagctggaagcg
cgcgcgctgatgatgtccaccaacaacatcctgtcgcccgccaacggcgagccgatcatc
gttccgtcgcaggacgtggtaatgggtctgtactacatgacccgtgaagcgatcaacgcg
aagggcgagggcatggccttcgccgacctgcaggaagtcgaccgcgcctaccgcagcggc
caggcgtccctgcacgctcgcgtgaaagtgcgcatcaacgaaaagatcaagggtgaagac
ggccaactgaccgccaatacccgtatcgtcgacaccaccgtcggccgcgcgctgctgttc
caggtcgttccggccggcctgccgttcgacgtggtcaaccagtcgatgaagaagaaggcg
atctccaagctgatcaaccactgctatcgcgtggtgggtctgaaggacaccgtcatcttc
gccgaccagctgatgtacaccggtttcgcctactcgaccatttccggcgtgtccatcggc
gtcaacgacttcgtcatcccggacgagaaggcgcggatcatcaacgccgccaccgacgaa
gtgaaggagatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctgtggtcgaaggccaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcgtcgatcgcgagggcaaggaagtcgaccaggagtccttcaac
tccatgtacatgatggctgactcgggtgcgcggggctccgcggcccagatccgtcagctg
gcaggtatgcgcggcctgatggccaagccggacggctcgatcatcgagaccccgatcacc
gcgaacttccgggaaggcctgaacgtactccagtacttcatctccacccacggtgctcgt
aagggtctggcggataccgcgctgaagaccgcgaactccggttacctgacccgtcgtctg
gtcgacgtggcccaggatctggtagtgaccgagatcgattgcggtaccgagcacggcctg
ctgatgtcgccgcacatcgaaggcggcgacgtggtcgaaccgctcggcgagcgcgtgctc
ggccgtgtgatcgcgcgcgacgtgttcaagccgggcagcgacgaggtcatcgtgccggcc
ggcaccctgatcgacgagaagtgggtggacttcctcgaagtgatgagcgtcgacgaagtg
gtggtgcgttccccgatcacctgcgaaacccgtcatggcatctgcgccatgtgctacggc
cgcgacctggcccgtggccatcgcgtcaacatcggcgaggcggtcggtgtcatcgctgcc
cagtccatcggtgagccgggcacccagctgaccatgcgtaccttccacatcggcggtgcg
gccagccggacctccgcggccgacaacgtccaggtgaagaacggcggcaccatccgcctg
cacaacctgaagcatgtggttcgtgccgacggcgcgctggtcgcggtttcccgttccggc
gaactggcggttgccgacgacttcggtcgcgagcgcgagcgctacaagctgccgtacggt
gcggtgatctcggtcaaggaaggtgacaaggtcgacccgggcgctatcgtcgccaagtgg
gacccgcacacccacccgatcgtcaccgaggtggacggtaccgtggccttcgtgggcatg
gaagagggcatcaccgtcaagcgtcagaccgacgaactgaccggcctgaccaacatcgaa
gtgatggatccgaaggaccgtccggctgccggcaaggacatccgtccggccgtgaagctg
atcgatgccgcgggcaaggacctgctgctgccgggtaccgacgtaccggcgcagtacttc
ctgccggccaacgccctggtcaacctgaccgacggcgccaaggtgagcatcggtgacgtt
gtcgcgcgtatcccgcaggaaacctcgaagacccgtgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaggctcgtcgtccgaaagagccttcgatcctggcggaaatcagc
ggcaccatctccttcggcaaggagaccaagggcaagcgccgcctggtcatcacgccgaac
gatggcagcgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtgttcgaa
ggcgaacaggtgaaccgcggcgaagtcatctccgacggtccgagcaacccgcacgacatc
ctgcgcctgctgggcgtgagctcgctggcgaagtacatcgtcaacgagatccaggacgtc
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgaagtcagcgagtccggcgactccagcttcatcaaaggcgaccaggtg
gaactcacccaggtgctggaagagaacgaacagctcggtaccgaggacaagttcccggcc
aagtacgagcgggttctgctgggtatcaccaaggcctccctgtcgaccgagtcgttcatt
tccgcggcgtcgttccaggagaccacccgcgtcctcaccgaggcggcggtcaccggcaag
cgcgacttcctgcgtggtctgaaagagaacgtggtcgtgggtcgcctgatcccggccggt
accggtctggcttaccacagcgagcgcaagcgtcagcgcgacctcggcaagccgcagcgt
gtgagtgccagcgaggcggaagccgcactgaccgaagcgctgaactcgagcggtaactaa
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integrated database retrieval system
