Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069: CFSAN002069_12270
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Entry
CFSAN002069_12270 CDS
T02735
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
senh
Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069
Pathway
senh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
senh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFSAN002069_12270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
senh03019
]
CFSAN002069_12270
03400 DNA repair and recombination proteins [BR:
senh03400
]
CFSAN002069_12270
Enzymes [BR:
senh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFSAN002069_12270
Messenger RNA biogenesis [BR:
senh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFSAN002069_12270
DNA repair and recombination proteins [BR:
senh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CFSAN002069_12270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AGQ78149
LinkDB
All DBs
Position
4603505..4605334
Genome browser
AA seq
609 aa
AA seq
DB search
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIP
ALLLDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLY
IAPERLMLDNFLDHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMAL
TATADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLNDAQIAL
STIGRVNQRFGMGYVVEVIRGANNQRIRDFGHDKLKVYGMGREKSHEHWVSVIRQLIHLG
LVMQNIAQHSALQLTDAARPVLRGDVPLKLAVPRIVALKPRVMQKSFGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPVSASEMLSVNGVGMRKLERFGKEFMALIR
AHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtgttgaatctggaatcaggggccaaacaggttttgcaggaaacc
tttggctaccaacagtttcgcccgggtcaggaagcgattattgatactgcgctctccggt
cgcgactgtctggtcgtcatgcccaccggcggcggcaaatctctgtgctatcaaatcccc
gcgttgttgctggacgggttgactgtcgtcgtttcgccattaatctcgttgatgaaagac
caagtcgatcagctactggcgaacggtgtggcggcggcgtgcctgaactccactcaaagc
cgcgagcagcagcttgaggtgatggcggggtgccgtaccggacagattcgtctgctgtat
attgcgccggaacgcctgatgctggacaactttcttgatcatctggcgcactggaatccg
gtattgctggcggtggatgaagcgcactgtatctcgcaatggggacatgatttccgtccg
gaatatgcggcgctcggtcagcttcgccagcgttttcccgctttgccgtttatggcattg
accgccaccgccgacgacaccacgcgccaggatattattcgtctgcttgggcttaacgat
ccgttaatccagattagtagctttgaccgaccgaatatccgctacatgctgatggagaag
tttaagccgctcgaccagttaatgcgctatgttcaggagcaacgcggcaaatcgggtatc
atctactgtaacagccgggcgaaagtggaagataccgctgcgcgcttgcaaagtcgcggc
attagcgcggcggcctatcatgcggggctggaaaacgctattcgcgtcgatgtgcaggaa
aaatttcagcgcgacgatctgcaaatcgtggtggcgaccgtcgcttttggaatgggcata
aacaaacctaacgtacgtttcgtcgtgcatttcgatatcccgcgcaatattgaatcctac
tatcaggaaacgggccgcgccgggcgcgacggactgcctgcggaagccatgctattttac
gatccggctgatatggcctggctacgtcgttgtctggaagagaaaccagccggacagctt
caggatattgaacggcataaactgaatgcgatgggcgcttttgccgaagcgcaaacctgc
cgccgcctggtattacttaattactttggcgaaggccgacaagaaccgtgcggcaactgc
gatatctgtctcgatccgcccaaacaatatgatggcttaaacgatgcccagattgcgctt
tctaccattggtcgggttaaccagcgttttggcatgggctacgttgtcgaggtgatccgc
ggcgcgaataaccaacgcatccgcgatttcggtcatgacaaactcaaggtttatggcatg
ggacgcgaaaagagccatgagcactgggtgagcgtgattcgccagctcattcatctgggg
ctggtaatgcaaaatattgcgcagcactccgcattacagttgacggatgccgcgcgtccg
gtactccgtggagacgttccgctaaagcttgcggtgccgcgcatcgtcgccctcaaaccc
cgcgtgatgcagaaatcgttcggcggtaattacgatcgcaaattgttcgctaagttgcgc
aagctgcgtaaagctatcgctgatgaagagaatatcccgccgtatgtggtctttaacgac
gccacgctgatagagatggcggaacagatgccggtttccgccagcgagatgttaagcgtt
aacggggttgggatgcgcaaactggagcgcttcgggaaagaatttatggcgctcatccgc
gcgcatgtcgatggtgatgacgaagagtag
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