Staphylococcus epidermidis PM221: SEB_01053
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Entry
SEB_01053 CDS
T03289
Name
(GenBank) Exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
sepp
Staphylococcus epidermidis PM221
Brite
KEGG Orthology (KO) [BR:
sepp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sepp03400
]
SEB_01053
DNA repair and recombination proteins [BR:
sepp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SEB_01053
Archaeal homologous recombinant proteins
SEB_01053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
ABC_tran
YjcZ
PriA_3primeBD
Motif
Other DBs
NCBI-ProteinID:
CDM13610
LinkDB
All DBs
Position
1050510..1053539
Genome browser
AA seq
1009 aa
AA seq
DB search
MKPLHIVMENFGPFIKETIDFEQVETDQLFLISGKTGSGKTMIFDAIVYALYGMASTKTR
KEGDLRSHFADGKSPMSVIYQFKVNNQTFKIHREAPFIKEGNITKTQAKLNIYELVDNQF
ELRESKVNQGNQFIVQLLGVNAEQFRQLFILPQGEFKKFLQSNSKDKQSILRTLFNSERF
DEIRHLLVENVKQEKVQIENRYTQIENLWNDIDTFNNDELALYKELESSQTDKMIEKFPQ
FNDYGCKILKSFEEAKNKITKELDDLNHKYKVNVELSENTKKLKAEKIKFDDLKKEQNYI
DKLKQELKMIQESKVLITYFTRLQSLKKDKDELVSLHEQSKLNETNYHNEIKGFQKQLEH
LSTRENEITQFNQYLEKNQVFFNQLDKIISSYQQKPVIEEEIKRLYSEYNDLITKKEELT
KEMNNKNKDFAIIEHYTEEIYKLKKIIDESERQKKDEKLFDKLQLDKSSYLSKLKEKKEQ
LNEIESSITNIDATLIDLNDKKDFVNEIKSAMSIGDTCPICGNEIHSLGEHIDFESIAQK
NNKIKRLESKKVKIRDEIIKIETRIEELNHRENELNFEKQEKKDISELQKQLNHLNQLKD
EQQSINKLVENFEKQEKEIVNKIHQFDLDLSRKNTQKEKLEIQINDFERHSQFSSVNDFE
TYYSHAKKQVETYEYENEKTKDKLNELNNKLKIEMNDQKHLTENLTQTSKEINNLELKME
KEMQQLGFESYDQVKSAADLSAQKDEIEREINIYNKNYQSYEIEINRLKELVKGKKLLNL
EELRQSIEKTNLKLDETNSQIATISYKIDNNSNKFNKIKNIIQILDDELKVQKEIFLLSE
ILAGKNDYKLTLENYVLIYYLEKIIFQANQRLSFMSGNRYQLIRREAISLGLSGLEIDVF
DFHSNKSRHISSLSGGETFQASLALALGLSEVVQQESGGITLDSMFIDEGFGTLDQETLE
TAIDTLINLKSSGRMVGIISHVSELKQRIPLILEVTSNQYESHTQFRKN
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
ttgaagcctttacatatagttatggagaactttggcccttttattaaagaaactattgat
tttgagcaagttgaaactgatcaactctttttaattagtggtaaaactggatctggtaaa
acaatgatttttgatgctatagtatacgcattatacggtatggcttcgaccaaaactaga
aaagaaggagatttaagaagtcattttgcagacggtaaatcgccaatgtctgtaatttat
caatttaaagttaataatcaaacttttaaaattcatagagaagcgccatttattaaagag
gggaatataactaaaacacaagccaagttaaatatatatgaattagttgataatcaattt
gaattaagagaaagtaaagtgaatcaaggtaatcaatttatcgtacaattattaggcgtt
aatgctgaacaatttcgtcaattatttattttgcctcaaggagaatttaaaaagtttctt
cagtcaaatagtaaagacaaacaatcgattcttagaacactttttaatagtgagcgattt
gatgagattagacatctacttgtagaaaatgtaaagcaagaaaaagtacaaattgaaaat
agatacactcaaattgaaaatttatggaatgatatagatacatttaataatgatgaattg
gccttatataaagaattagagagttctcagacagataaaatgattgaaaaattcccacaa
tttaatgattatggatgcaaaattctcaagtcatttgaagaagctaagaataaaataact
aaggaattagatgatttaaatcataaatataaagtgaatgttgaattaagtgagaatact
aaaaaattaaaagcggaaaaaatcaaatttgacgatttgaaaaaagaacaaaattatatt
gataaattaaagcaagaattaaaaatgattcaggaatctaaagtattaatcacttatttt
actaggttacaaagtttaaaaaaagataaagatgaattagtgtcacttcatgagcaatca
aaattaaacgaaacaaactatcacaatgaaattaaaggttttcaaaaacaactcgaacat
ttatcaacacgagaaaatgaaataactcaatttaatcagtatctagaaaaaaaccaagtt
ttcttcaatcaattagataagattattagtagttatcaacaaaaaccggtaattgaagaa
gaaataaaaagattatacagtgaatataatgatttaataaccaaaaaagaagaattgacg
aaagaaatgaacaacaagaacaaagattttgcaattattgaacattacactgaagagatt
tataagctgaaaaagattatagatgaatctgaaagacaaaaaaaggatgagaaattattt
gataaattacaactagataaatcatcttatcttagcaaattaaaagagaagaaagaacag
ttaaatgaaattgaatcatcaatcaccaatatagatgcgactttaattgatttgaatgac
aaaaaggattttgtaaatgaaataaagtccgctatgtcaattggagatacctgtccaatt
tgtggtaatgaaatacattcattgggagaacatattgattttgaatcaattgctcaaaaa
aataataaaataaaacggttagaaagtaagaaggtaaaaattcgtgatgaaataatcaaa
atagaaactcgaattgaagaattaaatcatagagaaaatgaattaaattttgagaaacaa
gaaaagaaggatattagtgagcttcaaaaacagcttaatcatttgaatcaactaaaagac
gagcaacaaagcataaataagttagtagaaaattttgagaaacaagaaaaagaaatagtt
aataaaatacatcagtttgatttagatttgagtcgaaagaacacgcaaaaagaaaaactg
gaaattcaaattaatgattttgaacgacattcacaattttcatcagtaaatgattttgaa
acttattattctcatgctaaaaaacaagttgagacgtatgagtatgagaatgagaaaact
aaagataaattgaacgagttgaataataagttaaagatagaaatgaatgatcaaaaacat
ttaactgagaatttaactcaaacaagtaaggaaataaataatttagaattaaaaatggaa
aaagaaatgcaacaacttggttttgagtcttatgatcaagtcaaaagcgctgcagattta
agtgctcaaaaagatgaaatagaaagagaaattaatatttataataagaactatcaaagt
tatgaaatagagattaacagactcaaagaattggttaagggcaaaaaattattaaattta
gaagaattacgacaatctatagaaaaaacaaacttgaaactagatgaaacgaattcacaa
atagctacgattagctataaaatagataataactctaacaaatttaataaaataaaaaat
ataattcagattctcgatgatgaattaaaagtgcaaaaagaaattttcttgctatcagaa
atattagctggtaaaaatgattataaattaacactagaaaattatgttttaatttattac
ttggaaaaaataatttttcaagcgaatcaacgactttcatttatgagtggaaatagatat
caactgattagaagagaggccatttccttagggttaagtggattggaaattgacgtgttt
gattttcattcaaataaatcgagacacataagttcactttcaggaggagaaacatttcaa
gcatcactagctttagctttaggattaagtgaagttgtacaacaagaatcaggtggaatc
actttagattctatgtttatagatgaaggatttggcactttagatcaagaaacactcgaa
actgcgatagatacattaattaatttaaaatcatctgggcgcatggttggtataatctca
catgtaagcgaacttaagcaacgcatacctttgattttagaagtgacaagtaaccaatac
gaaagtcatacacaatttagaaaaaattaa
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