Prodigiosinella confusarubida ATCC 39006: Ser39006_019025
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Entry
Ser39006_019025 CDS
T05290
Name
(GenBank) tRNA 4-thiouridine(8) synthase ThiI
KO
K03151
tRNA uracil 4-sulfurtransferase [EC:
2.8.1.4
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera00730
Thiamine metabolism
sera01100
Metabolic pathways
sera01240
Biosynthesis of cofactors
sera04122
Sulfur relay system
Module
sera_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
Ser39006_019025
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
Ser39006_019025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sera03016
]
Ser39006_019025
Enzymes [BR:
sera01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.4 tRNA uracil 4-sulfurtransferase
Ser39006_019025
Transfer RNA biogenesis [BR:
sera03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
Ser39006_019025
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiI
THUMP
Rhodanese
QueC
Diphthami_syn_2
Focal_AT
tRNA_Me_trans
Motif
Other DBs
NCBI-ProteinID:
AUH06034
UniProt:
A0A2I5TN90
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All DBs
Position
complement(4183723..4185171)
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AA seq
482 aa
AA seq
DB search
MKFIIKLFPEITIKSPSVRLRFIKILTSNIRNVLKSHDETLAVVRHWDHIEVRAQDELQH
DSICDALTRIPGIHHILEVEDRDYTDMHHIFEQTLAMYREQLEGKTFCVRVKRRGKHDFS
SQDVERYVGGGLNQHIESARVNLTAPQVTVHLEIEQDRLLLIKGRHEGIGGFPIGTQEDV
LSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEIGVKQVAHYLWNRFGSSHRVRFV
AIDFEPVVGEILENVDDGQMGVVLKRMMVRAASRVAERYGVEALVTGEALGQVSSQTLTN
LRLIDNASDTLVLRPLISHDKEHIIKLARELGTEDFAKTMPEYCGVISKSPTVKAVKAKI
EHEEAHFDFSILDRVVSEARNIDIREIAEQTRQEVVEVETVAGFVANDVLLDIRSPDEQE
EKPLSLDQVTIKCLPFYKLATQFGDLDQSKTYLLYCARGVMSRLQALYLREQGFSNVKVY
RP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttatcattaaattgttcccagaaattaccatcaaaagcccatctgtacggtta
cgctttattaaaattctcaccagtaatattcgtaacgttttaaagtcccatgatgaaaca
ctggcggttgtccgtcactgggatcatattgaagttcgagcacaagatgaacttcagcac
gatagcatatgtgatgcgctgactcgaattcctggcattcaccatattcttgaagttgaa
gatcgtgactatacggatatgcaccatatttttgaacaaacactggcaatgtatcgggaa
cagttggaagggaaaaccttttgtgtccgagtcaagcggcgtggtaagcatgatttcagc
tctcaggatgttgagcgttatgttggtggtggcttgaaccagcatatcgaaagcgcacgt
gtcaatctgactgctccacaggtaacggtgcatctggaaatcgagcaggatcgcctgctg
ttgattaaagggcgccatgaaggtatcggcggtttcccgattggtacccaggaggatgtg
ttatctctgatttctggcggttttgattccggtgtgtcgagttatatgctgatgcgtcgt
ggttgccgtgtccattactgcttttttaatttaggcggagcggcacatgaaatcggtgtg
aagcaggttgctcattatctctggaatcgttttggcagttcacaccgggttcgttttgtc
gctattgattttgaaccagtggtgggagaaattctggagaacgtcgatgatggccagatg
ggtgtcgtcctgaagcgcatgatggttcgtgcggcgtcgagagttgccgagcgttatggt
gtggaagcactggttaccggcgaagcactggggcaagtctccagccagacattgaccaat
ctacgcttgatcgataatgcttccgatacattggttttacgtccactgatttctcatgat
aaagaacacattatcaagctggcgcgcgagctgggcactgaagattttgccaagaccatg
ccggaatattgtggtgtgatttccaagagcccgacggtaaaagcggtgaaagcaaaaatt
gagcatgaagaagctcattttgacttttctattctggaccgagtggttagcgaagcccgc
aatattgatatccgtgagattgcagagcaaacccgtcaggaagtcgttgaagtggaaacc
gtggcgggcttcgtcgccaatgatgttttgctggatatccgctcgcctgatgagcaggaa
gagaaaccgttgtcgctggatcaggtaacgattaagtgtttgcctttctataagctggcg
acccaatttggcgatttggaccaaagcaaaacctatttgctttattgtgcgcgtggtgtg
atgagtcgattacaggcgctttatctgcgtgaacagggctttagtaatgtgaaagtttat
cgtccctga
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