Serratia sp. FS14: L085_05380
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Entry
L085_05380 CDS
T03313
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
serf
Serratia sp. FS14
Pathway
serf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
serf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L085_05380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
serf03019
]
L085_05380
03400 DNA repair and recombination proteins [BR:
serf03400
]
L085_05380
Enzymes [BR:
serf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L085_05380
Messenger RNA biogenesis [BR:
serf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L085_05380
DNA repair and recombination proteins [BR:
serf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L085_05380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AIA46527
LinkDB
All DBs
Position
1180094..1181926
Genome browser
AA seq
610 aa
AA seq
DB search
MSTAAVINRELLAEQVLRDTFGYQQFRPGQQTIINAAIGGQDCLVVMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLLAYGVSAACYNSTQTREEQLDVMAGCRNGTIKMLY
IAPERLMMESFLSLLDHCPPAMLAVDEAHCISQWGHDFRPEYRALGQLKQRFPSMPVIAL
TATADEATRGDIVRLLSLQDPLVQVSSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTAARLQSRGLSVGAYHAGLDNDRRAQVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAILLYDPADMAWLRRCLEEKTAGQQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKHENCGNCDICLDPPKRYDGLEDARKAL
SCVYRVGQRFGLGYIVEVLRGSNNQRIREYGHDKLPVYGIGRDQTTEHWTSVLRQLIHLG
FITQNIAMHSALQLTEAARPVLRGEVALQLAVPRIQSLKSRSSANQKSYGGNYDRKLFAK
LRKLRKSIADEENIPPYVVFNDATLLEMAEQMPIKAGDLLSVNGVGQRKLERFGAPFMAM
IRDHLDNDED
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaccgcagcagtgattaacagagagttgctggccgagcaggtattgcgcgatacc
tttggctaccagcaattccgcccgggccaacaaacgattatcaacgccgcgatcggcggg
caggattgcctggtggtgatgccgaccggcggcggcaagtcgctgtgttaccaaatcccg
gcgctggtgatggacggcctgacgctggtcgtttccccgttgatctcgctgatgaaggac
caggtcgaccaactgttggcctacggcgtttccgccgcctgctacaactcgacgcaaacc
cgcgaggagcagctggacgttatggccggctgccgcaacggtaccatcaagatgctgtac
atcgcgccggagcggctgatgatggaaagcttcctcagcctgctcgatcactgtccgccg
gcgatgctggcggtggatgaggcgcactgtatttcgcagtggggccatgacttccggccg
gaatatcgcgcgctgggtcagctgaaacagcgcttcccgtcgatgccggtgatcgcgctg
accgccaccgccgacgaggccacccgcggcgatatcgtgcgcctgctgtcgctgcaggac
ccgctggtgcaggtcagcagcttcgaccggccgaacatccgctacacgctggtggaaaaa
ttcaaaccgctcgatcagctgtggcgcttcgtgcaggatcagcgcggcaagagcggcatt
atctattgcaacagccgcgccaaggtggaagacaccgccgcgcgcctgcaaagccgcggg
ctgagcgtcggcgcttatcacgccgggctggacaacgatcgccgcgcccaggtgcaggaa
gcgttccagcgtgacgatctgcaggtggtggtggccaccgtcgccttcggcatgggcatc
aacaaacccaacgtgcgtttcgtggtgcatttcgacatcccgcgcaatatcgaatcctat
tatcaggagaccggccgcgccgggcgcgacggcctgccggccgaagccatcctgctgtac
gatccggccgatatggcctggctgcgccgctgcctggaggagaaaaccgccgggcaacag
ctggacatcgagcgccacaagctgaatgccatgggggcgttcgccgaggcgcaaacctgc
cgccgcctggtgctgctcaactactttggcgaaggcaagcacgagaactgcggcaactgc
gatatctgcctcgatccgcccaagcgttacgacgggttggaggacgcgcgcaaggcgctg
tcctgcgtgtatcgcgtcggccagcgctttggcctcgggtacatcgtggaagtgctgcgc
ggctccaacaaccagcgtatccgcgaatatggccacgacaagctgccggtgtacggcatc
ggccgcgatcagaccaccgaacactggaccagcgtgctgcgtcagctgatccacctgggt
tttatcacccagaacatcgccatgcactcggcgctgcaattgaccgaggcggcgcgcccg
gtgttgcgcggcgaggtggcgctgcagctggcggtgccgcgcattcagagcctgaagtcg
cgcagcagcgccaaccagaaatcctacggcggcaattacgatcgcaagctgttcgccaag
ctgcgcaaactgcgcaagtcgatcgccgacgaagaaaacattcctccctacgtggtgttc
aacgacgccacgctgctggaaatggccgaacagatgccgatcaaggccggcgatctgctg
agcgtcaacggcgtcggccagcgcaaactggagcgtttcggcgcgccctttatggcgatg
atccgcgaccatctcgacaatgacgaagactga
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