Saccharothrix espanaensis: BN6_14220
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Entry
BN6_14220 CDS
T02404
Name
(GenBank) Ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sesp
Saccharothrix espanaensis
Pathway
sesp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sesp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN6_14220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sesp03019
]
BN6_14220
03009 Ribosome biogenesis [BR:
sesp03009
]
BN6_14220
Enzymes [BR:
sesp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BN6_14220
Messenger RNA biogenesis [BR:
sesp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN6_14220
Ribosome biogenesis [BR:
sesp03009
]
Prokaryotic type
rRNA processing factors
BN6_14220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
RD3
Motif
Other DBs
NCBI-ProteinID:
CCH28745
UniProt:
K0JPI2
LinkDB
All DBs
Position
1482766..1485609
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AA seq
947 aa
AA seq
DB search
MSNTNKPAGAGGGNATSAHPALVDLPEKLRVHALAKLLGTSSKDVVAALADLGETVKGAQ
SSVSRDLALKVAESLLNWDDIVTGDVDEATEAPALPAREVAALTPLFAPPSAVFLPPAPV
AAPPAVVVVEEEDHDDDSDVDASADDAGDEGEGRRRRRRGRRGRGRGKGVGEDGHDEDSA
EEPAAAEVEEAESAETPADDDSEGGSSRRRRRRRRRKVGADDEAAPNEDDPPNTVVHVRE
TRDARDDKADSEAAQNEVRSVRGSTRLEAKRQRRRDGREAGRRRAPVLSEAEFLARREAV
ERTMVVRERGDRTQIGVLEDGVLVEHFVTSSGTGSLVGNVYLGRVQNVLPSMEAAFIDIG
RGRNAVLYAGEVDWDAAGLEGKARKIEQALSTGDSVLVQVTKDPVGHKGARLTTQISLPG
RFLVYVPGGGATGISRKLPDNERKRLKDILKRVVPEDAGVIIRTASEGIAEDELGRDVTR
LQATWQVIKVKADTPRAQAPQLLYEEPDLLVKVVRDLFTEDFSALIVQGSDAWETIDAYV
RHVAPDLQERLRRHVGNSDVFVEHRIDEQLLKALDRKVWLPSGGYLVIDRTEAMTVIDVN
TGKFTGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLT
ECLGRDRTRHQVAEVTSLGLVQMTRKRVGTGLLEAFSATCEHCRGRGVVVTTDSAHSHSP
SNGQSQGQQQQQQQQQSRKSRRGKGGETPEPVAEVVPEPVREPEVVAEPSAPDEPADEAV
EPKRERRQRRRARREAGAASRQADAEPGDAGHTDVAEPAVAEPVAAEPAAVEPAAVEPAA
VEPAVEAAAVESASEPVADEPLAAVVEPTVVEPVAAEPEPASEPVVAEPAADEPVHVQPP
TQVGTAEANAADQSLNGHSEPVVATRRRTRRAASRPAGPPLGAVTEG
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacacgaacaagcccgccggtgccggcgggggtaacgccacatccgcgcacccc
gcgctggtggacctgccggagaagttgcgggtccacgcgctggcgaagctgctgggcacc
agcagcaaggacgtcgtggccgcgctggccgacctgggcgagaccgtcaagggcgcccag
tccagcgtgagccgcgacctcgcgctcaaggtcgccgagagtttgctgaactgggacgac
atcgtcaccggtgacgtggacgaggccaccgaggcgcccgcgctgcccgcccgggaggtg
gccgcgctcacaccgctgttcgcgccgccgtccgcggtgttcctgccgcccgccccggtc
gccgctccgccggcggtcgtggtggtcgaggaggaggaccacgacgacgactcggacgtc
gacgcgtccgccgacgacgccggtgacgagggcgaaggccgtcgccgccgccgtcgcggc
cggcgtggtcgcggccgcggcaagggcgtgggcgaggacgggcacgacgaggactccgcc
gaggagcccgccgccgccgaggtcgaggaggccgagtccgccgagaccccggccgacgac
gactccgagggcggctccagccgccgtcgccggcgtcgtcgccgccgcaaggtcggcgcg
gacgacgaggccgccccgaacgaggacgacccgcccaacaccgtcgtgcacgtccgcgag
acgcgggacgcgcgggacgacaaggccgactccgaggccgcccagaacgaggtgcgcagc
gtgcgcggctcgacccggctggaggccaagcgccagcgccgccgggacggtcgggaagcc
ggccgccgccgcgccccggtgctgtccgaggccgagttcctggcccgccgcgaagccgtc
gagcgcaccatggtggtgcgcgagcgcggcgaccgcacgcagatcggcgtgctggaggac
ggcgtgctcgtggagcatttcgtcacgtcgtcgggcaccggttcgctggtcggcaacgtc
tacctgggccgcgtgcagaacgtgctgccgtccatggaagcggccttcatcgacatcggc
cgcggccgcaacgcggtgctctacgccggcgaggtcgactgggacgccgccggcctggag
ggcaaggcccgcaagatcgagcaggccctgtccaccggcgacagcgtcctggtgcaggtc
accaaggacccggtcggccacaagggtgcccgcctgaccacccagatcagcctgcccggc
cggttcctggtctacgtgcccggcggcggcgcgacgggcatcagccgcaagctgcccgac
aacgagcgcaagcgcctcaaggacatcctgaagagggtcgtccccgaggacgccggcgtg
atcatccgcaccgcctccgagggcatcgccgaggacgagctggggcgcgacgtcacccgt
ctccaggcgacctggcaggtcatcaaggtcaaggccgacacgccccgcgcccaggccccg
cagctgctctacgaagagcccgacctgctggtgaaggtcgtgcgcgacctgttcaccgag
gacttctcggcgctgatcgtgcagggctcggacgcgtgggagaccatcgacgcctacgtg
cggcacgtcgcgccggacctccaggagcgcctgcgccgccacgtcggcaacagcgacgtc
ttcgtggagcaccgcatcgacgagcagctgctcaaggcgctggaccgcaaggtgtggctg
ccctctggcggctacctcgtgatcgaccgcaccgaggcgatgacggtcatcgacgtcaac
accggcaagttcaccggatcgggtggaaacctggaagagacggtgacccggaacaacctg
gaggcggcggaggagatcgtccgccagctccggttgcgcgacatcggcggcatcatcgtc
atcgacttcatcgacatggtgctggagtccaaccgcgacctggtgctccgccggctgacc
gagtgcctgggtcgggaccggacgcgccaccaggtggccgaggtgacgtcgctgggcctg
gtgcagatgacccgcaagcgggtcggcacgggcctgctggaggcgttctcggcgacctgc
gagcactgccgcggtcgtggcgtggtcgtgaccaccgattcggcgcacagccacagcccg
tcgaacggccagagccagggccagcagcaacagcagcagcagcagcagagccgcaagtcg
cggcgcggcaagggcggggagacgccggagccggtcgccgaggtggtcccggagcccgtg
cgggaacccgaggtcgtcgccgagccgtccgccccggacgagcccgccgacgaggccgtg
gagcccaagcgggagcgccgccagcgtcgtcgtgcccgccgcgaggccggtgcggcgagc
cgccaggccgacgccgagcccggtgatgccggccacaccgacgtggccgagcccgctgtc
gccgagcctgttgccgccgagcccgccgcggtcgagcctgccgcagtcgagcccgctgcg
gtggaacctgccgtcgaggctgccgcagtcgagtccgcgtccgagccggtcgctgacgag
ccgctggccgccgtggtcgagccgaccgtggtggaaccggtggccgccgagcccgagccc
gcgtccgagccggtcgtggccgagcccgcggcggacgagccggtacacgtccagccgccg
acccaggtcggcaccgccgaggcgaacgccgccgaccagtcgctcaacggccactcagag
cctgtggtggccacccgccgccgcacgcgccgggccgcttcccgcccggccggcccgccc
ctgggcgcggtcaccgagggctga
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