Saccharothrix espanaensis: BN6_69520
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Entry
BN6_69520 CDS
T02404
Name
(GenBank) putative ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sesp
Saccharothrix espanaensis
Pathway
sesp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sesp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN6_69520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sesp03019
]
BN6_69520
Messenger RNA biogenesis [BR:
sesp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN6_69520
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
CCH34188
UniProt:
K0KC59
LinkDB
All DBs
Position
complement(7710479..7712161)
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AA seq
560 aa
AA seq
DB search
MINPNSPPPALPDGGLRVVALGGIGEVGRNMTVFEHAGRLLVVDCGVLFPEDDQPGVDLI
LPDFRAIEDRLDDIDALILTHGHEDHIGAVPFLLKLRPDLPVVGSRFTLALLSAKCREHR
QNPTLVEITDGERRAFGPYELEFFAVNHSIPDAVAVAIRTAAGLVLHTGDIKLDQLPLDG
RLTDLAGFSRLGDEGVDLFLVDSTNAEVPGFVAPEREIGPVLENVIRKANQRVIVACFAS
HVHRVQQVLDVAVQYNRRVALVGRSMVRNMGIAAELGFLKVPDGLFVDLNVAMEMPENEV
LFVSTGSQGEPLSALSRMARGEHRQISIQAGDTIVLASSLIPGNENAVFGVVNGLARLGA
TVIHQGNAKVHVSGHSPAGELLFLYNAVRPSNVMPVHGEWRHLRANAALAVATGVAEERV
VIAEDGVVVDMVDGKAAVSGKVEVGHVYVDGLSVGDVGESTLSDRLVLGEGGFIAITVAI
DSNSGRAVAPPTVSGRGFSDDPKALDQAISLVEMELSRTEVEGITDSHRIAQAVRRVVGR
WVAETYRRRPMIVPTIIPVN
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
gtgatcaacccgaactcacccccgcccgcactgcccgacggaggtctgcgcgtcgtcgca
ctgggagggatcggcgaggtcggccgcaacatgaccgtgttcgaacacgccggccgactg
ctggtcgtggactgcggggtgctgttccccgaggacgaccagcccggcgtcgacctgatc
ctgccggacttccgggcgatcgaggaccggctggacgacatcgacgcgctgatcctgacg
cacggccacgaggaccacatcggcgcggtgccgttcctgctcaagctgcggccggacctg
cccgtcgtggggtcccggttcacgctcgcgctgttgtcggccaagtgcagggaacaccgg
cagaaccccaccctggtggagatcaccgacggcgagcgccgcgcgttcggcccgtacgag
ctggagttcttcgcggtcaaccactccatcccggacgcggtcgcggtcgccatccgcacc
gccgccggcctggtgctgcacaccggcgacatcaagctcgaccagctgccgctggacggc
cggctgaccgacctggccgggttctcccggctgggcgacgagggcgtggacctgttcctg
gtcgactccaccaacgccgaggtgcccgggttcgtggcgccggagcgggagatcggcccg
gtgctggagaatgtcatccgcaaggccaaccagcgggtcatcgtggcctgcttcgcctcg
cacgtgcaccgcgtgcagcaggtgctcgacgtggccgtgcagtacaaccggcgggtcgcg
ctggtcggccggtcgatggtccgcaacatgggcatcgccgccgagctgggcttcctgaag
gtgcccgacggcctgttcgtggacctcaacgtggccatggagatgccggagaacgaggtg
ctgttcgtctcgaccgggtcgcagggcgagccgctctcggcgctgtcgcggatggcgcgc
ggcgagcaccggcagatctcgatccaggccggcgacacgatcgtgctggccagctcgctc
atcccgggcaacgagaacgcggtgttcggcgtggtcaacggcctggcccggctgggcgcg
acggtcatccaccagggcaacgccaaggtgcacgtctccggccactcgccggccggtgag
ctgctgttcctctacaacgcggtccggccgtccaacgtcatgccggtgcacggcgagtgg
cggcacctgcgcgccaacgccgcgctcgccgtggccaccggtgtcgccgaggagcgcgtg
gtgatcgccgaggacggcgtggtcgtcgacatggtcgacggcaaggccgccgtgagcggc
aaggtcgaggtcggccacgtctacgtggacggcctgtcggtcggcgacgtcggcgagtcg
acgctgtccgaccgcctggtgctcggcgagggcgggttcatcgcgatcaccgtggcgatc
gactccaactccggccgcgcggtcgccccgccgacggtctccggccgcggcttctccgac
gacccgaaggcgctggaccaggcgatctccctggtggagatggaactgtcccgcaccgag
gtcgagggcatcaccgactcgcaccgcatcgcgcaggccgtgcgccgggtggtcggccgc
tgggtcgccgagacctaccgccgccggccgatgatcgtgccgacgatcatcccggtgaac
tag
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