Streptococcus equi subsp. zooepidemicus ATCC 35246: SeseC_00780
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Entry
SeseC_00780 CDS
T02355
Symbol
deaD
Name
(GenBank) DEAD box helicase family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sezo
Streptococcus equi subsp. zooepidemicus ATCC 35246
Pathway
sezo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sezo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SeseC_00780 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sezo03019
]
SeseC_00780 (deaD)
03009 Ribosome biogenesis [BR:
sezo03009
]
SeseC_00780 (deaD)
Enzymes [BR:
sezo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SeseC_00780 (deaD)
Messenger RNA biogenesis [BR:
sezo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SeseC_00780 (deaD)
Ribosome biogenesis [BR:
sezo03009
]
Prokaryotic type
rRNA helicases
SeseC_00780 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
DUF1924
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEJ24864
LinkDB
All DBs
Position
645523..647139
Genome browser
AA seq
538 aa
AA seq
DB search
MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL
NKIRTADNTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALKSGA
HVVVGTPGRLLDLIKRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPDDRQTLLF
SATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVQQPE
LSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAA
RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLTMIEHLTKK
RMKPLKPATAEEAFQAKKKVALKKIERDFADDAIRSNFEKFKGDAMKLAAEFTPEELALY
ILSLTVQDPDTLPEVEIAREKPLPFKYVGGGHGNKNGKTGRGNRSRSGRDNRRGGYRHEK
RNDYDGDRRPRRDKRDGHDGSGSYDFKRKQKRSNKDLHKKGKGVEAKTSGFIIRHKGN
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagcatttaacttatcagaagatattcagtcagctgttgttacagcaggc
tttgaaaaagcctctcctattcaggagctgaccattccgttagccttggagggacgagat
gttatcggacaggctcagacaggaacaggaaaaacagcagcctttggtctaccaactctg
aataagattcgtacagccgataacaccattcaggcattggtgattgctccgacgcgtgag
ctggctgtccaaagtcaggaagagctgttccgttttggtcgtgataaaggcgtcaaggtt
cgctcagtatatggtggctcaagcattgagaagcaaattaaggccctaaagtctggggcg
catgtcgttgttggaacgccaggacgtctgttagatttgattaagcgtaaggccttgagg
ctagaccatgttgagacactcattttagatgaagctgatgaaatgctgaatatgggattt
ttagaggacattgaagcgattattagtcgtgtccctgacgatcgtcaaaccctgttattt
tcagcaacaatgccagctccaatcaaggaaattggtgtcaagtttatgaaggatcctgag
catgttcaggttaaaaacaaggaattaacaaatgtgaatgttgatcaatactatgtgcgt
gttaaggagcaagaaaaatttgataccatgacacgtctgatggacgttcagcagccagag
ctatcaattgtatttggtcgcacaaagcgtcgtgttgatgaaatcacgcgcggcttaaaa
ttgcgtggttttcgcgcagaagggatacatggtgaccttgaccaaaataagcgccttcgt
gtcatacgcgactttaaaaatgatcaacttgatattttagtggcaaccgatgttgctgcg
cgtgggcttgatatttcaggcgttactcatgtgtacaattacgatattacacaggatcca
gaaagctatgtgcaccgtattggccggaccggtcgtgcaggtaagtcaggggaatccatt
acctttgtctcaccaaatgagatgggctatctgaccatgattgagcacctgactaagaag
cgcatgaagccactcaagccagctacagcagaggaagcctttcaggctaagaaaaaggtt
gccctcaaaaagattgagcgtgattttgcagatgatgctattcgctcaaactttgagaaa
tttaagggcgatgcgatgaaattggcagcagagtttaccccagaggagctagcgctctat
atcttgagcttgactgtccaagatccagataccttaccagaggttgagatagcgcgtgaa
aagccattaccgtttaagtatgttggtggtggtcatggcaataaaaatggcaagacaggt
cgtggcaatcgtagtcgtagcggtcgtgataaccgtcgaggtggctatcgtcatgagaag
agaaatgattatgatggtgaccgccgtccaaggcgtgataaacgtgatgggcacgatggc
agtggtagctatgactttaagcgaaagcaaaaacgctctaacaaggacctacacaagaaa
ggcaagggtgttgaagctaagacgtctggatttattatccgtcataaaggaaactaa
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