Streptococcus equi subsp. zooepidemicus ATCC 35246: SeseC_01052
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Entry
SeseC_01052 CDS
T02355
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sezo
Streptococcus equi subsp. zooepidemicus ATCC 35246
Pathway
sezo03030
DNA replication
sezo03410
Base excision repair
sezo03420
Nucleotide excision repair
sezo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sezo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SeseC_01052 (ligA)
03410 Base excision repair
SeseC_01052 (ligA)
03420 Nucleotide excision repair
SeseC_01052 (ligA)
03430 Mismatch repair
SeseC_01052 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sezo03032
]
SeseC_01052 (ligA)
03400 DNA repair and recombination proteins [BR:
sezo03400
]
SeseC_01052 (ligA)
Enzymes [BR:
sezo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SeseC_01052 (ligA)
DNA replication proteins [BR:
sezo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SeseC_01052 (ligA)
DNA repair and recombination proteins [BR:
sezo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SeseC_01052 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SeseC_01052 (ligA)
MMR (mismatch excision repair)
DNA ligase
SeseC_01052 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SeseC_01052 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
RTT107_BRCT_5
Motif
Other DBs
NCBI-ProteinID:
AEJ25075
LinkDB
All DBs
Position
872143..874101
Genome browser
AA seq
652 aa
AA seq
DB search
MKKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEKAYPAYVLKDSPTQLVG
GTILTGFQKYQHQYPLFSLQDAFSREELNAFDQRIKSAFPEAEYLAELKIDGLSISLVYE
AGILKVGATRGDGTVGENITENIKNIEDIPKRLDQALDVTIRGEAYMSRKAFKTINEERQ
ENGEPEFANPRNAAAGTLRQLDTRIVAKRQLATFLYQEVGLEAADSQQKTLERLADLGFS
VNSHYLLSSSMNDIWDFIQNIEATREELPYEIDGVVVKVNQLAIQEELGFTVKAPRWAIA
YKFPAEEKEAEIVSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVVVYKAGDIIPAVLRVVEAKRSNQTPMPIPTACPSCQSQLVHFEDEVALRCINPLCPS
LVQRSLEHFASRQAMNIAGLGPAVVEKLYSAGLVHDVADIYQLALEDLLTLDGIKEKSAE
KLLSAIEQSKANSAEKLLFGLGIRHIGAKASRLILETYGDLETLLSVTAEELAQIAGLGL
VIGQSLVQYFQQDQAAQLLAELKSAGVNLAYLGQRPDRQAELFGLTVVLTGKLEKLNRTQ
AKEKLEQLGAKVTGSVSKKTDLVVAGSEAGSKLVKAQQLGIRIEDEDWLLNL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaacgaataagagaattgactgatctgttaaatcaataccgtcaggagtattac
accaatgacgctccttctgtatctgatagtgagtatgataagctttatcgtgagcttgta
gagttggagaaggcttatccagcctatgtcctaaaggacagccccacacagctggtgggc
ggtacgattttgacaggctttcagaaatatcagcaccagtatccgctctttagtttgcag
gatgctttttcacgtgaagagcttaacgcctttgatcagcggatcaaatcagcctttcct
gaggctgaataccttgctgagctaaaaattgatggcttatccatttcattggtttatgag
gctggtattttaaaagttggagcgacgcgtggtgatgggactgttggtgagaatatcact
gaaaacatcaagaacattgaggatattcccaaacggctagatcaagcacttgatgtgacg
atacgaggagaggcctatatgtcgcgcaaggcctttaagacgatcaatgaagagcgtcag
gaaaatggtgagccagaatttgccaatccaagaaatgcagcggcaggaacgttgcggcag
ctagatactaggattgttgccaagcggcagctagcgacctttttgtatcaggaggtaggc
ttagaggctgctgatagccagcaaaagaccttggagcgcttggccgatttaggcttttcg
gtcaatagccactatctgctgtcctcatcgatgaatgacatttgggactttatccagaac
attgaagccactagagaagagctaccttatgagattgatggtgtggtggtcaaggttaat
cagttggcgatccaagaggagcttggctttaccgtcaaggcaccacgctgggctattgct
tataagtttccagcagaagaaaaggaagctgagattgtatctgtggattggacggttggc
cgaacaggtgtggtcacaccaacagctaatttgacccctgtgcagctggcaggcaccact
gtcagtcgagcgaccttgcataatgttgattatattgcagaaaaggatattcgcattggg
gatacggtggtggtgtataaggctggagatattattccggctgttttacgagtggttgag
gcaaagcgcagcaatcagactccaatgcctattcctacagcctgtccttcttgtcagagt
cagctggtgcattttgaggacgaggtggctttgcgttgcattaaccccttgtgtccgagc
ttggttcaacggagcttggagcattttgccagtcgtcaggcgatgaatatcgctggtctt
ggtccagcggttgttgaaaagctttattctgctggcctggtgcatgatgtcgctgatatt
taccagctagctctagaggatttgctgaccctagatggcattaaggaaaaatcagctgaa
aagctcttgtctgctattgagcaatcaaaggctaattcggctgaaaagctcttgtttggg
cttggtattcgtcacattggagcaaaagccagtcgcttgatattagaaacctatggtgat
ttggagaccttgttaagcgtgactgctgaggagctagcgcaaattgctggacttggtctt
gtcatcgggcaatcgctggtgcagtatttccagcaggatcaagcagctcagctcttagct
gaattaaagtcggcaggtgttaatctagcttatttgggccaaagacctgatcggcaggct
gagctttttggactcacagtagtattgacaggaaaattagaaaagctcaaccgtacccaa
gccaaggaaaagctagagcagcttggtgctaaggtaacaggaagcgtttctaaaaaaaca
gatttagttgttgctggtagcgaggcaggctctaagctggtcaaggcccagcagctgggc
atcagaattgaagatgaggattggttgctcaatctttag
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