Sinorhizobium fredii USDA 257: USDA257_c18870
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Entry
USDA257_c18870 CDS
T02188
Symbol
lpdA1
Name
(GenBank) dihydrolipoyl dehydrogenase LpdA
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd00010
Glycolysis / Gluconeogenesis
sfd00020
Citrate cycle (TCA cycle)
sfd00260
Glycine, serine and threonine metabolism
sfd00280
Valine, leucine and isoleucine degradation
sfd00310
Lysine degradation
sfd00380
Tryptophan metabolism
sfd00620
Pyruvate metabolism
sfd00630
Glyoxylate and dicarboxylate metabolism
sfd00640
Propanoate metabolism
sfd00785
Lipoic acid metabolism
sfd01100
Metabolic pathways
sfd01110
Biosynthesis of secondary metabolites
sfd01120
Microbial metabolism in diverse environments
sfd01200
Carbon metabolism
sfd01210
2-Oxocarboxylic acid metabolism
sfd01240
Biosynthesis of cofactors
Module
sfd_M00009
Citrate cycle (TCA cycle, Krebs cycle)
sfd_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
sfd_M00036
Leucine degradation, leucine => acetoacetate + acetyl-CoA
sfd_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
sfd_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
USDA257_c18870 (lpdA1)
00020 Citrate cycle (TCA cycle)
USDA257_c18870 (lpdA1)
00620 Pyruvate metabolism
USDA257_c18870 (lpdA1)
00630 Glyoxylate and dicarboxylate metabolism
USDA257_c18870 (lpdA1)
00640 Propanoate metabolism
USDA257_c18870 (lpdA1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
USDA257_c18870 (lpdA1)
00280 Valine, leucine and isoleucine degradation
USDA257_c18870 (lpdA1)
00310 Lysine degradation
USDA257_c18870 (lpdA1)
00380 Tryptophan metabolism
USDA257_c18870 (lpdA1)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
USDA257_c18870 (lpdA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfd04147
]
USDA257_c18870 (lpdA1)
Enzymes [BR:
sfd01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
USDA257_c18870 (lpdA1)
Exosome [BR:
sfd04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
USDA257_c18870 (lpdA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
Pyr_redox_3
FAD_oxidored
FAD_binding_3
FAD_binding_2
NAD_binding_8
HI0933_like
DAO
GIDA
Amino_oxidase
2-Hacid_dh_C
Thi4
Lycopene_cycl
3HCDH_N
CDCA
AlaDh_PNT_C
Motif
Other DBs
NCBI-ProteinID:
AFL50474
UniProt:
I3X3L8
LinkDB
All DBs
Position
complement(1997066..1998505)
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AA seq
479 aa
AA seq
DB search
MSYDVIVIGSGPGGYVTAIRSAQLGLKTAIVEREHLGGICLNWGCIPTKALLRSAEILDH
ANHAKNYGLTLEGKMTANVKDVVARSRAVSARLNGGVAFLMKKNKVDVIWGEAKLTKPGE
IAVGAPSKPAVQPQNPVPKGVKGEGTYTAKHIIIATGARPRALPGIEPDGKLIWTYFEAM
KPEELPKTMLVMGSGAIGIEFASFYRSMGVDVTVVELLPQIMPVEDSEISAVARKQLEKR
GLKIFTDAKVTKVEKGANDVTAHVETKDGKVTQIKADRLISAIGVQGNIENLGLEALRVE
TSRGCIVTDGYGKTNVAGIYAIGDVAGPPMLAHKAEHEGVICVEKIAGVPGVHALDKGKI
PGCTYCDPQVASVGLTEARAKELGRDIRVGRYSFGANGKAIALGEDQGLIKTIFDKKTGE
LLGAHMVGAEVTELIQGFVVAMNLETTEEELMHTIFPHPTLSEMMKESVLDAYGKVLNA
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacgacgtcatcgttatcggttcgggcccgggcggctatgtcaccgccatccgc
tcggcgcaactgggcttgaagacggcgatcgtcgaacgcgagcacctgggcggcatctgc
ctcaactggggctgcatcccgaccaaggcgctgctgcgttccgccgaaatcctcgaccat
gcgaaccacgccaagaactacggcctgacgctcgaaggcaagatgacagccaacgtcaag
gatgtcgtcgcccgctcgcgcgccgtgtcggcgcggctgaacggcggcgtcgccttcctc
atgaagaagaacaaggttgacgtgatctggggcgaggcgaagctcaccaagcccggcgag
atcgccgtcggcgcgccgtcgaagccagccgtccagccgcagaaccccgttccgaagggg
gtaaagggcgagggcacctacacggccaagcacatcatcatcgccaccggcgcccggccg
cgggcactgcccggcatcgagccggacggcaagctgatctggacctatttcgaagcgatg
aagcccgaggagttgccgaagaccatgctcgtcatgggctccggcgcgatcggcatcgaa
ttcgcgagcttctaccggtccatgggcgtcgatgtgacggtcgtcgagctgctgccccaa
atcatgccggtcgaggattcggagatctccgccgtcgcccgcaagcaactcgagaagcgc
ggcctcaagattttcaccgacgccaaggtgacgaaggtcgagaagggcgccaacgacgtg
accgcccatgtcgagacgaaggacggcaaagtcacgcagatcaaggcggaccggctgatc
tccgccatcggcgtccagggaaatatcgagaatcttggactcgaggcgctgcgcgtcgag
accagccgcggctgcatcgtcaccgacggctacggcaagaccaatgttgccggcatctac
gcgatcggtgacgtggccggcccgccgatgctcgcacacaaggccgagcatgaaggtgtg
atctgcgtcgaaaagatcgccggtgttccgggcgtccatgcactcgacaagggcaagatc
ccgggctgcacctattgcgacccgcaggtcgcctccgtcggcctgactgaagccagggcc
aaggaactcggtcgcgacattcgtgtcggccgctacagcttcggcgccaacggcaaggcg
atcgcgctgggcgaagaccagggcctgatcaagacgatcttcgacaagaagaccggcgaa
ctcctcggcgcgcacatggtcggcgcagaggtgaccgaactgatccagggcttcgtcgtc
gccatgaacctggagacgacggaagaggagttgatgcacacgatcttcccgcatccgacg
ctctcggaaatgatgaaggagagcgtgctcgacgcctacggaaaggtgctgaacgcgtga
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