KEGG   Sinorhizobium fredii USDA 257: USDA257_c52060Help
Entry
USDA257_c52060    CDS       T02188                                 

Gene name
ykoU3
Definition
(GenBank) putative ATP-dependent DNA ligase YkoU
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sfd  Sinorhizobium fredii USDA 257
Pathway
sfd03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sfd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    USDA257_c52060 (ykoU3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sfd03400]
    USDA257_c52060 (ykoU3)
Enzymes [BR:sfd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     USDA257_c52060 (ykoU3)
DNA repair and recombination proteins [BR:sfd03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     USDA257_c52060 (ykoU3)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AFL53731
UniProt: I3XCX5
LinkDB All DBs
Position
5399137..5401734
Genome map
AA seq 865 aa AA seqDB search
MAARSEPLSEYNRRRDFSKTREPKGAVARTHPGQKRFLVQKHDATRLHYDFRLEWEGVLK
SWAVTRGPSLNPEDKRLAIRTEDHPLAYGDFEGTIPEGEYGGGTVMLWDTGWWEPEDDPE
KGLKKGKLAFRLHGSRMKGGWALVRMRPRDGEKRESWLLVKQDDDVASEDGESLIKQHVV
SARTGRTMDEIAEGRGEKRARVWHSNKSTAANLNAGAVSQDEGRSKRRARKSSVKPPAFR
PPQLATLVTKAPAGDDWLNEAKFDGYRLIAAVGGGIARCYTRNGLDWTEKFPTIAAALAE
LDCDSALIDGEVVALADQGSNFSALQKALRTGASMRFYAFDLIELDEKDLSRRPLVERKE
KLAALLDSLGTTATIQYSEHVRGNGEHILAAICKAGQEGIIAKEAKAPYRSGRTRSWLKV
KCTKRQEFVIGGYTPSTKKGRAFASLLLGTFEGGKLIYRGGVGTGFGEKVMEELAAAFAK
RQRPTSPFDQVPRERSRDAVWLKPDLVAEVDFAEFTADGHIRHGSFEGLREDREAKTVKL
ETAKPTDAEPGAAKGKSSAKTRTASPTKGDADILGVHISHPDRILFEGQGITKIDLARYY
AVVAERMLPFAADHPVSLVRCPQGGQRQCFFQKHANEGFPEAIREVPITESSGETENYMY
VHDAKGLVAAVQMGTLEFHIWGATIDRLEKPDRLVFDLDPDPSVDFATVKAAATTLRDEL
AEIGLKTVAMVTGGKGVHVIVPLRPHAEWDEAKGFAKRLAQTFAERDPEHFVATMSKAKR
KGRIFIDWLRNDRGATAIAPYSTRARAGGPVATPVSWDELEALDAANTFHIADIIERIEA
GTDPWREIGEIKQSLTKKMLNSTIS
NT seq 2598 nt NT seq  +upstreamnt  +downstreamnt
atggccgcgcgcagtgaaccgctttccgaatacaatcggcgccgcgatttttcgaagacc
cgcgaaccgaaaggcgcggttgcccgcacgcatcccggccagaagcgctttctcgtccag
aagcacgacgcgacccggctgcactacgatttccgccttgaatgggagggtgtcctgaag
agctgggcggtcacccgcggaccgagcctcaacccggaggacaagcgtcttgccatccgc
accgaggatcaccccctggcctatggcgacttcgaggggacgatcccggaaggcgagtat
ggcggcggcacggtgatgctttgggataccggctggtgggaaccggaagacgatcccgag
aagggcctgaaaaaaggcaagctcgccttccgcctgcacggcagccgcatgaagggtggc
tgggcgctggtgcgtatgcgcccgcgggacggcgaaaagcgggaaagctggctcttggtc
aagcaggacgacgatgtcgcgtcggaggacggcgagagtctcataaagcaacatgtggtc
agcgcgcggaccggccgaacgatggacgagatcgccgagggccgcggcgagaagcgagca
cgcgtctggcattcgaacaaaagcacggccgccaatctcaacgccggcgcagtttcgcaa
gacgaaggtcggagcaagcgccgggcgcgaaaatcctccgtcaaaccacccgccttccgg
ccgccgcagcttgccaccctggtcacgaaagcgcccgctggcgacgactggctgaacgaa
gcgaagttcgacggctaccgcctgatagccgccgtcggcggcgggatcgcccgctgctat
acgcgcaacggtctcgattggaccgagaagttcccgacgattgccgccgcccttgcggaa
ctcgactgcgactccgcgctgatcgacggcgaggtggtggcgctggcggaccaagggtcg
aatttctccgccctgcagaaggccttgagaaccggtgcgagcatgcgtttctacgccttc
gacctgatcgaactcgatgaaaaggacctcagccgccggccgctcgtcgaaaggaaagag
aagctggcggcgctgctcgactcgctcggcaccacggcgaccatccagtacagcgagcat
gtccgcggcaatggcgagcacatcctggcggcaatatgcaaggccggccaggaaggcatc
atcgccaaggaggcgaaggccccctaccgcagcggccgcacgcgaagctggctgaaggtg
aaatgcacgaaacgccaggaattcgtcatcggcggctacaccccctcgaccaagaaaggg
cgcgccttcgcctcgcttcttctcggcaccttcgagggcggcaagctgatctatcggggc
ggcgtcggcaccggcttcggcgaaaaggtgatggaggagcttgccgcggcctttgcgaag
cgccaacgtccgacatcgcccttcgatcaagtgccgcgcgaaaggagccgagatgccgtc
tggctgaagcccgacctcgtcgctgaggtggacttcgcagagttcaccgctgacggacat
atccgccacggctcgttcgagggattgcgcgaggacagggaggccaagaccgtgaaactg
gaaacagcgaaaccgacagacgccgagccgggggccgcgaagggcaaatcctcagccaag
acccgtacggcgtcgcccaccaagggcgatgccgatatcctcggcgtccacatctcgcac
cccgaccggatccttttcgagggtcagggcatcaccaagatcgatctcgcccgctactat
gccgtcgtcgcggagcggatgctgcccttcgccgcagaccatcccgtttcgctggtgcgt
tgcccccagggcgggcagcggcaatgtttcttccagaagcatgcaaacgagggtttcccg
gaggcgatccgggaagtgccgatcacggaatcatcgggcgagaccgaaaactacatgtat
gtccacgacgccaagggtctcgtcgccgccgtgcagatgggcacgctcgagtttcacatc
tggggtgcaacgatcgaccgcctggaaaaacctgatcgcctggtcttcgacctcgatccc
gatccgagcgtcgacttcgccacagtgaaggcagccgccaccacgctccgcgacgaactt
gccgagatcggcctcaagacggttgccatggtgaccggcggcaagggcgtccacgtcatc
gtgccgcttcgtccgcacgccgaatgggacgaggcgaagggcttcgccaagaggcttgcg
cagactttcgccgagcgcgaccccgagcatttcgtcgccaccatgtccaaggcaaagcgc
aaggggcggatcttcatcgactggctgaggaacgaccgcggcgccaccgcgatcgccccc
tactccacccgcgcccgcgcaggcggacccgtcgccactccggtcagctgggacgagctc
gaagccctcgacgccgccaataccttccacatcgccgacatcatcgagcgcatcgaggcc
ggcaccgatccctggcgcgagatcggcgagatcaagcagtcgctgacgaagaaaatgctg
aattcgacaatcagctag

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