KEGG   Shigella flexneri 2002017 (serotype Fxv): SFxv_3535Help
Entry
SFxv_3535         CDS       T01883                                 

Gene name
dacB
Definition
(GenBank) D-alanyl-D-alanine carboxypeptidase, fraction B, penicillin-binding protein 4
  KO
K07259  serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
Organism
sfe  Shigella flexneri 2002017 (serotype Fxv)
Pathway
sfe00550  Peptidoglycan biosynthesis
Brite
KEGG Orthology (KO) [BR:sfe00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    SFxv_3535 (dacB)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:sfe01002]
    SFxv_3535 (dacB)
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:sfe01011]
    SFxv_3535 (dacB)
Enzymes [BR:sfe01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     SFxv_3535 (dacB)
   3.4.21  Serine endopeptidases
    3.4.21.-  
     SFxv_3535 (dacB)
Peptidases and inhibitors [BR:sfe01002]
 Serine peptidases
  Family S13: D-Ala-D-Ala peptidase C family
   SFxv_3535 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:sfe01011]
 Peptidoglycan biosynthesis and degradation
  DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
   SFxv_3535 (dacB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Peptidase_S13 Beta-lactamase2 Transpeptidase TrbL
Motif
Other DBs
NCBI-ProteinID: ADA75549
UniProt: D2A8A4
LinkDB All DBs
Position
3361178..3362611
Genome map
AA seq 477 aa AA seqDB search
MRFSRFIIGLTSCIAFSVQAANVDEYVTQLPAGANLALMVQKVGASAPAIDYHSQQMALP
ASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLVARFGADPTLKRQDIRNMV
ATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFSVSLYS
APKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPSDLNRFTLTGCLPQRSE
PLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLRQTQVNEPGTVVASKQSAPLHDLLK
IMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILRQQAGVDIGNTIIADGSGLS
RHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVSAKTGS
LQGVYNLAGFITTASGQRMAFVQYLSGYAVKPADQRNRRIPLVRFESRLYKDIYQNN
NT seq 1434 nt NT seq  +upstreamnt  +downstreamnt
atgcgattttccagatttatcatcggattgaccagctgtatagcgttcagtgttcaggcc
gcgaatgttgatgagtacgttactcaactccccgcaggtgccaaccttgccctgatggtg
caaaaagtcggtgcgtcggcccccgctattgattaccacagtcagcagatggcgctgccc
gccagtacccagaaagtgattactgcgctggcggcgttgattcaactcggccccgatttt
cgtttcaccacgacgcttgaaaccaaaggcaatgtggaaaacggcgtacttaagggtgac
ttagtggcgcgatttggtgccgatccgacgttaaaacgtcaggatattcgcaatatggtc
gcgactttgaaaaaatctggcgtcaaccaaatcgatggcaatgtgttgatagatacctcc
attttcgccagccacgataaagcccccggctggccatggaatgacatgacacaatgcttt
agcgctccgcctgctgccgccatagttgaccgcaactgtttctccgtctcgctctacagt
gccccaaagcctggtgatatggcttttatacgcgtggcatcttattaccccgttacgatg
ttcagccaggtacgcaccctcccccgtggttctgccgaagcgcaatactgcgaactggat
gtggtgccaagcgacctgaaccgctttacgctgacgggatgcctgccacaacgttctgag
ccgctcccgttggcttttgccgtgcaggatggagccagctatgccggtgcaattctgaaa
gatgagttaaaacaggcgggtatcacctggagcggaacactgctgcgccagactcaggtt
aacgaacctggaacggtagttgccagtaaacagtcggccccgctgcacgatctgcttaag
attatgctgaaaaagtcggacaacatgatcgccgatacggttttccgcatgatcggccat
gcgcgcttcaatgtgcctggaacatggcgggctgggtcggacgccgtgcgtcagatcctg
cgccagcaagccggtgtcgatattggtaacaccattattgccgatggttcagggctttcg
cggcataacctgattgcccccgccaccatgatgcaggtgctgcaatacattgcccaacac
gacaatgaacttaactttatctccatgctgccgcttgcgggctatgacggctctttgcag
taccgtgcaggtctgcatcaggcgggcgtggatggcaaagtctcagcgaaaaccggttcg
ttgcagggggtatataacctggcgggattcattaccacagcgagcgggcaacgaatggca
tttgtacaatatctttctggctatgcagtaaaacccgcggatcagcgtaatcgccgtatt
ccgttagtgcgttttgaaagccgtttgtacaaagatatttatcagaacaattag

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