Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_00809
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Entry
SPHFLASMR4Y_00809 CDS
T04949
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sfla
Sphingorhabdus sp. SMR4y
Pathway
sfla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPHFLASMR4Y_00809 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfla03019
]
SPHFLASMR4Y_00809 (rnr)
03016 Transfer RNA biogenesis [BR:
sfla03016
]
SPHFLASMR4Y_00809 (rnr)
Enzymes [BR:
sfla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SPHFLASMR4Y_00809 (rnr)
Messenger RNA biogenesis [BR:
sfla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPHFLASMR4Y_00809 (rnr)
Transfer RNA biogenesis [BR:
sfla03016
]
Prokaryotic type
tRNA degradation factors
SPHFLASMR4Y_00809 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
HTH_12
Symplekin_C
LexA_DNA_bind
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ASK87589
UniProt:
A0A220W468
LinkDB
All DBs
Position
complement(844723..847020)
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AA seq
765 aa
AA seq
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MAGPRKTHKPKQVPTRKQILDFIERSDQQVGKREIAKAFGLRGSDKIALKALLKDMADEG
LIDSTPGRAFHKMGGIPKVTVLKIVAIDGNEAIGVPERWEADNAPAPKLRIKEKGRRAAL
AVGDRILARTEERGQGHVAFMMKKLAQSSEMLMGVVEKDERDRYWLKPVDRKIRRSTPIL
DLGEAEPGHLVLAEPVKRGSEVKARVKDILGDPFAPKSFSLIAIHKFEIPLHFPDAVKEE
AEQATKLPLSKDKREDLRHLPIVAIDPADARDHDDAIWAEPDDNPDNKGGFKALIAIADV
SYYVRSGSKLDREAYKRGNSVYFPDRVVPMLPEALSTDVCSLKQGVERAALVCHVTINPK
GQVIASRFTRAIVKLAGNIAYEDAQAAMDGKLDHELKANALAPLWACWKLLARARDEREP
LNLDLPEKRVVLDDQGKIVEIAVRERLDAHRLVEDYMIVANVAAARMLESKKSPVIYRVH
ETPSREKLIALKDYLKSFDMSFAMGQVIKPAVFNNLIKQVDDELLLPLVMEQILRSQTQA
YYGHTNMGHFGLSLGSYAHFTSPIRRYADLVVHRALVSACKLEQPAPENSSIPEFSGLGK
EEAGRLERISETISKLERRAMKAEWETVDRYISAHLADRIGEVVKCRITGVQNFGFFATV
EDLGGDGLVPVRTLGAERFDYDESKQQLTGMDSGTTYNIGQKIELRLVEANAATGSLLFE
LPEGANHMAARPAPYRARKGKPHRKGKPGRPANIRGNKGKARKKK
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggccggtccgagaaaaacccacaaaccgaaacaggttcccacgcgcaaacagatactg
gattttatcgagcggtccgaccagcaggtcggcaaacgggaaatcgcgaaagccttcgga
ttgcggggctcggacaagattgcgctgaaagcgctgctgaaggacatggccgacgaaggg
ctgatcgacagcacgccggggcgggcgttccataaaatgggcggtattcccaaggtcacc
gtcctcaagatcgttgcaatcgacggcaatgaagcgatcggcgttcccgagcgctgggaa
gcggataatgcaccggcaccaaagctgcgcataaaggaaaaggggcgccgtgcggcgctg
gccgttggcgaccggatattggcgcgaaccgaagagcgcgggcaggggcatgtcgccttc
atgatgaagaagctcgcccagagcagcgagatgctgatgggcgtggtcgagaaagacgaa
cgcgaccgctattggctgaagcctgtcgaccgcaagattcgccgcagcacgccgattctc
gatctgggtgaagccgagccgggccatctggtgctggccgagccggtgaagcggggatcc
gaggtcaaggcgcgggtgaaggacattttgggcgatccgttcgctcccaaatccttcagc
ctgattgccattcacaaattcgagattccgctgcactttcccgatgcggtgaaagaggaa
gcggagcaggcgaccaagctgccgctttcaaaggacaagcgcgaagatctgcgccatctg
ccgattgtcgcgattgatccggccgatgcccgcgaccatgatgacgcaatctgggccgag
ccggatgacaatcccgacaacaagggcgggttcaaggcgctgatcgcgattgccgatgtg
tcctattatgtccgctcgggcagcaagcttgaccgtgaagcctataagcgcggcaacagc
gtctatttcccggaccgggtcgtgccgatgctgccggaagctttgtcgaccgatgtctgt
tcgctgaaacagggcgtcgagcgggcggctctggtctgccacgtgacgatcaatcccaaa
gggcaggtgatcgcttcgcgcttcactcgcgcgatcgtcaagctggccggcaatattgcc
tatgaagatgcacaggcggcgatggacggcaagctggatcatgaactgaaggccaatgca
ctcgcgcccctttgggcttgttggaagctgctcgccagggcgcgcgacgagcgcgagccg
ctcaatctcgatctgcccgaaaaacgggtggtgctcgacgatcagggcaagattgtcgaa
atcgccgtccgcgaacggctcgatgcgcatcgtctggtcgaggattatatgatcgtcgcc
aatgtcgcggcggcgcggatgctggaatcgaaaaaatccccggtcatttaccgtgttcac
gagacaccctcgcgcgagaagctgattgcgctgaaggattatctcaagagcttcgacatg
agctttgccatggggcaggtgatcaagccggccgtattcaacaatctgatcaagcaggtc
gacgacgaactgctgctgccgctggtcatggagcagatcttgcgcagccagacccaggcc
tattatggccataccaatatgggccatttcggcctgtcgctgggcagctatgcgcatttc
accagcccgatccgtcgctatgccgatctggtcgtgcaccgggcgctggtcagtgcctgc
aagctggagcaaccggcgccggagaacagctcaatccccgaattttccggactgggcaag
gaagaggcggggcgtctcgaacggatatcggaaacaatttccaagctcgaacgccgcgcg
atgaaagcggagtgggaaaccgtcgatcgctatatctctgcccatcttgccgaccggatc
ggagaggtggtcaaatgccggatcaccggggtccagaatttcggctttttcgcgaccgtg
gaggatctgggcggcgacgggctggtcccggtccggacgctgggcgccgaacggttcgac
tatgacgagtcgaaacagcagctcaccggcatggacagcggtaccacctataatatcggc
cagaaaatcgaactgcggctggtcgaggcgaatgccgccaccggcagtctgttgtttgaa
ttgcccgagggcgccaatcacatggcagcccggccggccccctatcgtgcgcgcaagggc
aagccgcaccgcaagggcaagcccggccgtccggccaatattcgtggcaacaagggcaag
gcccggaagaagaaatag
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