Scleropages formosus (Asian bonytongue): 108920738
Help
Entry
108920738 CDS
T04919
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108920738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfm03000
]
108920738
03019 Messenger RNA biogenesis [BR:
sfm03019
]
108920738
04121 Ubiquitin system [BR:
sfm04121
]
108920738
Enzymes [BR:
sfm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108920738
Transcription factors [BR:
sfm03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
108920738
Messenger RNA biogenesis [BR:
sfm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108920738
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108920738
Ubiquitin system [BR:
sfm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108920738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Nup35_RRM_2
Torus
zf-CCCH_2
zf-UDP
Motif
Other DBs
NCBI-GeneID:
108920738
NCBI-ProteinID:
XP_018585259
UniProt:
A0A8C9UYD6
LinkDB
All DBs
Position
21:complement(21760936..21771545)
Genome browser
AA seq
793 aa
AA seq
DB search
MIPTEAGRKSKWNLQARRSEFFCHTLVLCPMCHRMSRSPEVKDDTMECPLCMEPLEIDDI
NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAIYKPLSPEDLQRIKNEKKQKQ
NERKQKMTENRKHLASVRVVQRNLVFVVGLSQRLADTEVLKRPEYFGKFGKIHKVVINNS
TSYAGSQGPSASAYVTYLRSEDALRAVQCVNNVVVDGRTLKASLGTTKYCSYFLKSMQCP
KPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQELYKLNPAFLQNSTGGAEKSKSKS
SSTQRPNSSNKEAWPWLQGSGKAVNGLADHHKTPPLLDGSDSEHLTPDGPDSDLGPGQGG
VLSSFPSNCDPSSPSDKIQEAISIGNGENIPENSRESPSPPPGLTKSGLVVPISVSSLGA
RSPFEGAAAESQSLFSDNSNFRHPNPVPGSHVPFHSSSHGNSDWPTAPEPQSLFTSDTIP
VSSSTDWQAAFGFGSSKQQDDDLGFDPFDVTRKALADLIEKELSVQDASPLSPNKPRGPR
HGPPSKGLGPLPQHFAHLQHRAVHSSFSFPSQQAHHPWLGFPAQSSLLHLNHMAKATSDS
HFMDLSLPAQRSPGVGGFPITESSSSVESIDVKEWQDGLRALLPNINISFGGLPNSSSSS
SSSCINHTGTAPGSAGLSHGLNWDRTASWTDPAIITGIPATSAYSLDSLRDENPPHWLKS
LQALTEMEAPGSTGPVCVTHSNPFSSQLPLHRAGWAPAPAGQFHSPPPGFQTAFRPPGQT
ATELLQSATMDRH
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgatccccacagaggcaggtagaaaaagcaagtggaatctccaagccagacgaagcgag
ttcttctgccacaccctggtgctctgcccaatgtgccataggatgtcccgcagccctgaa
gtgaaagatgataccatggagtgtcctctctgcatggagcctctggagatcgatgatata
aacttcttcccctgcacctgtggctaccagatttgccggttctgctggcaccggatacgt
acagatgagaatgggctctgtcctgcctgcagaaagccatacccagaggatccagccatt
tataagccactatcccctgaagaccttcagaggataaagaatgagaagaaacagaagcag
aacgagcgcaaacagaagatgactgagaaccgcaagcatctggctagtgtgcgggtggtg
cagaggaacctggtgtttgtggtggggttgtcccagaggctggccgacactgaggttcta
aagaggccagaatattttgggaagtttggcaaaatccacaaagtggttatcaacaacagc
acatcatatgcagggtctcagggtcccagtgccagtgcctacgtcacatacctccggtct
gaagatgcactcagagctgtacagtgtgtcaacaatgtggttgtggatggcagaacacta
aaggcctccttaggcacaacaaagtactgtagttacttcctgaagagcatgcagtgtcca
aagccagactgtatgtaccttcatgagctgggggacgaggcagccagttttacaaaagag
gagatgcaggcagggaaacaccaggagtatgaacagaaacttctgcaagaactctacaag
ctgaaccccgccttcctgcaaaactccactgggggggccgagaagtcaaagagcaagtcc
agctctacacagaggcccaacagcagcaacaaagaggcatggccatggcttcagggctca
ggaaaagcagtcaatggactggctgaccaccacaaaacaccaccgcttctcgatggctct
gactcagagcacttgactccggatggacccgactcggacttggggccgggccagggaggt
gtactctcttcatttccctcaaactgtgacccttcaagtcctagtgacaaaatacaagaa
gccatcagtatcggaaatggtgaaaatataccagaaaacagtagggagtcaccctcaccc
cctccaggcctcaccaagtcgggccttgttgtccctatcagtgtgtccagccttggtgcc
cggtccccatttgagggggcagcagccgagtcccagtcacttttctctgacaacagcaat
ttccgacatcccaaccccgttcctggcagtcacgttcccttccacagttccagccatggc
aactctgattggcccacagctcccgaaccccagagcctcttcacatcagataccataccg
gtgtcgtcatccacagattggcaagcagcctttggctttggctcctctaagcagcaggac
gacgacctgggctttgatccgtttgatgtcactcgcaaggcactggctgatttgattgaa
aaggagctttcagttcaagatgcatcacccctgtccccaaacaaacctcgtggtccccga
catggtccccccagcaaagggcttgggcccctgccccaacattttgcgcacctgcagcac
agagctgtgcacagttcctttagctttccgagccagcaagctcaccacccttggctaggc
ttccctgcacagagcagcctcctgcacctgaaccacatggccaaggctacttcagacagc
cacttcatggacttgagtttgccagcgcagcgtagtccaggagtagggggcttccctatc
acagaaagcagcagttctgtagagagtatagacgtcaaagagtggcaggatggccttaga
gcactcttacccaatatcaacattagctttgggggcctgccaaactcttcctcttcgtca
tcatcctcctgtatcaaccatactgggacagcacctggctcagcagggctgtcacacggt
cttaattgggatagaacggccagttggacggatccggcgatcataacaggtattccagca
acctctgcctacagtttggactctctccgcgatgaaaacccaccacactggctgaagtcc
ttacaagctctcacagagatggaggctcctggctccacaggtcctgtgtgtgtcactcac
agtaaccccttcagctcacagctgcccctccacagagcagggtgggcccctgctcctgct
ggccagttccattcacctccacctggtttccagacagccttcagacccccaggccagact
gccacagagctgctacagagtgccactatggaccgtcattag
DBGET
integrated database retrieval system
