Scleropages formosus (Asian bonytongue): 108920826
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Entry
108920826 CDS
T04919
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04010
MAPK signaling pathway
sfm04210
Apoptosis
sfm04218
Cellular senescence
sfm04620
Toll-like receptor signaling pathway
sfm04621
NOD-like receptor signaling pathway
sfm04622
RIG-I-like receptor signaling pathway
sfm04623
Cytosolic DNA-sensing pathway
sfm04625
C-type lectin receptor signaling pathway
sfm04920
Adipocytokine signaling pathway
sfm05132
Salmonella infection
sfm05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108920826 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
108920826 (nfkb1)
04218 Cellular senescence
108920826 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
108920826 (nfkb1)
04621 NOD-like receptor signaling pathway
108920826 (nfkb1)
04622 RIG-I-like receptor signaling pathway
108920826 (nfkb1)
04623 Cytosolic DNA-sensing pathway
108920826 (nfkb1)
04625 C-type lectin receptor signaling pathway
108920826 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
108920826 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108920826 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
108920826 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfm03000
]
108920826 (nfkb1)
Transcription factors [BR:
sfm03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
108920826 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
108920826
NCBI-ProteinID:
XP_029103128
LinkDB
All DBs
Position
21:22303484..22322860
Genome browser
AA seq
964 aa
AA seq
DB search
MAEDDSYLQAHFLDMDTFAPWMGMETMNNFSSVSHATSARIVAVDGPYLQIVEQPKQRGF
RFRYGCEGPSHGGLPGASSERNRRSYPQVKICNYQGPARVVVQLVTSSAEPHFHAHSLVG
KQCEKGVCIADLPPKDTSISFPNLGILHVTKKNVSKTLEERMTEAFRMGYNYGVAIHPEI
DCLQGEVRIPREFTEQQKSLISSAAVNQAKEMDLSVVRLMFTAFLPDSDGGYSRRLDPVI
SEPIYDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDDTGQVWE
AYGDFSPTDVHRQFAIVFKTPKYRNLNLQKPISVFVQLKRKSDNETSEPKPFTYHPQVID
KEEVQRKRQKTLPNFQDYGPAGGSGGMFRGGAGGGGGPAAGAGPGTGAGPSYYQGYGYGT
GSYGSGYSFSQGSGGTGMKHASQGPSGDDDGSGPGGDDDSEDDAPGAGGAACLRGPPAAD
EEERRETETPLAEPERADGPEGDSSMCALQDGLLETARRQAQALFHYAMSGDVRMLLALQ
RPLMTSQDEDGDTCLHLGVIHSRTTALCGLAQVISALPGEDVVNMRNDLYQTPLHLAVVT
QQEEAVTALLEAGADATLADRHGNTALHLAAQQSDGRMAALLLQHPQMVKLIEQPNATGL
CPIHLAVQASSLGALRELLSGGAHVEAQELSSGRTALHLATERDDVSLAGCLLLEGNAHV
DSCTYDGSTPLHVAAGRGSVKLSALLMAAGADPHKENCEPLYDTEEDRCPPGEDEEGEED
EGFIPGTTPLDIAPCTEVYDILNGKRYQPSAAVAAVPPQGDMKRLGEDTRRALCHALEQP
TSTWEGLAQALGLGVLNSAFRLSASPAHTLLDSYEVSGGTLKELEEALRLLGSASALDIL
QGALVEAVPSSGTAEELAAAALDVLDLKDRGAEDGGICDSGVETSYMKSGLSLSGSLCGP
PGSS
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagacgactcgtacctgcaggcgcactttctagatatggatacttttgcacct
tggatgggaatggagaccatgaacaacttctcatcggtgtcgcacgccacctcggcacgg
atcgttgcagtagatggaccttatctccagattgtggagcagcccaaacagagggggttc
cgcttccgctacggctgcgaggggccgtcccatggggggctcccgggagcttccagcgaa
aggaacaggaggtcgtatcctcaggtgaagatttgtaactaccaggggccggcgcgagtc
gtggtacagctggtgacctcctccgcagagccacacttccacgcgcacagcctggtgggc
aagcagtgcgagaagggcgtctgcatcgctgacctgccgcccaaagacaccagcattagc
ttccccaacttgggcatcctccacgtgacaaagaagaacgtgagcaaaaccctggaggag
cggatgacggaggcctttcggatgggctacaactacggcgtggccattcacccagagata
gactgcctgcagggggaggttcgcatcccacgggaattcacagagcaacagaagagtctg
atcagcagcgcggccgtgaaccaggccaaggagatggacctgagcgtggtgcggctcatg
ttcaccgccttcctgccggacagcgacggcggctacagccgccggctggaccccgtcatc
tcggagcccatctacgacagcaaagcgcccaatgcctcaaacctgaagatcgtgaggatg
gaccgcacggcgggctgcgtgacaggcggcgaggaggtctacctgctgtgcgacaaggtg
caaaaagatgacatccaggtgcgcttttacgaggaagacgacacgggccaggtgtgggag
gcctacggggacttctcccccaccgatgtgcacaggcagtttgcaatcgtgttcaagacg
cccaagtaccggaacctgaacctgcagaagcccatctcggtgtttgtccagctgaagcgg
aagtcggacaacgagacgagcgagccgaagccgttcacgtaccacccgcaggtgatcgac
aaggaggaggtgcagcgcaagaggcagaaaactctgcccaatttccaggactacgggccg
gcgggaggaagcggtggcatgttcaggggcggagcgggaggaggaggaggcccggccgcc
ggagcaggtcctggcacgggagcaggcccctcctactatcagggctacggctacgggacg
ggcagctatggcagcggctactccttctcccagggcagcggcggcaccgggatgaaacac
gcctcccagggcccgagcggcgacgacgacggcagcggccccggcggtgatgatgacagt
gaggacgatgcccctggggccgggggggccgcgtgcctccgtggtccgcctgcggcggat
gaggaggagagacgggagacggagacccctttggccgaacccgagcgagcggatggcccg
gagggggactcgagcatgtgcgcgctgcaggacgggctgctggaaacggcccggcgacaa
gcccaggccctctttcactatgccatgagtggggatgtgcgcatgctgctggccctgcag
cgtcccctgatgaccagccaggacgaggacggagacacttgcctgcacctgggggtcatc
cacagccgcacgacggcgctatgcggtctggcccaggtcatctccgccctgcccggggag
gacgtggtgaacatgaggaacgacctctaccagacgccgctgcacctggccgtggtcacg
cagcaggaggaggcggtgaccgcgctgctcgaggccggggccgacgccaccctcgccgac
cgccacggcaacacggcgctgcacctggccgcgcagcagagcgacggcaggatggcggcg
ctgctcctgcagcacccacagatggtcaagctcatagagcaacccaatgccacggggctg
tgccccatccacctagccgtacaggccagcagcctgggcgctctccgagagctcctctcc
ggcggtgcccacgtcgaggcgcaggagctgagcagcggacgcacggccttgcacctggcc
accgagcgggacgatgtgtcgctggccggctgcctgctgctcgagggcaacgcgcacgtg
gactcttgcacctacgacggctccactccgctgcacgtcgctgctggacgcggctccgtc
aagctgagcgctctcctgatggctgcaggggccgacccgcacaaggagaactgtgagccg
ctgtacgacaccgaggaggaccggtgtccaccgggggaggatgaggagggcgaggaggac
gaaggcttcatcccagggaccacaccgctggatatagcgccgtgcacggaggtgtacgac
attctgaacggcaaacggtaccagcctagcgccgcggtggctgcagttcctcctcaaggg
gacatgaagagattgggggaggacacgagacgtgcgctgtgccacgccctggagcagccc
acctcgacatgggagggtctggcgcaggcgctggggctcggtgtgctcaacagcgccttc
cggttgagcgcgtcccccgcgcacacgctgctggacagctatgaggtgtcgggcggcacg
ctcaaagagctggaggaggccctgagactcctggggagcgcctctgccttggacatcctg
cagggggcgctagtcgaggctgtgccttcgtcgggcacagcggaagagctggcagcggcc
gccttggacgtgctggacctgaaggacaggggggcggaggacggcggcatctgcgacagc
ggcgtcgagacgtcctacatgaagtctggcctcagcctctccgggtcgctgtgcggccca
cccggctcgtcttag
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