Shewanella frigidimarina: Sfri_0560
Help
Entry
Sfri_0560 CDS
T00395
Name
(GenBank) transcriptional regulator, LuxR family
KO
K20918
LuxR family transcriptional regulator, positive regulator of biofilm formation
Organism
sfr
Shewanella frigidimarina
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfr03000
]
Sfri_0560
Transcription factors [BR:
sfr03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
Sfri_0560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GerE
Sigma70_r4
Sigma70_r4_2
HTH_23
MecA
VpsT-like_REC
DUF6362
HTH_40
CENP-B_N
HTH_11
HTH_29
Terminase_5
HTH_10
Motif
Other DBs
NCBI-ProteinID:
ABI70421
UniProt:
Q087Z4
LinkDB
All DBs
Position
649717..650385
Genome browser
AA seq
222 aa
AA seq
DB search
MSSNIDELVFLHQIAAPCHLAILAESIGLKTRIVKHAAELELEKKSNNFYLVSQKGAALD
SKGIPLLVSRLVEHVPVALYQVERGSLDQESALLLGVRGLLYSDQRMDLMLTGLRKMVSD
ELWYDRPLISKIFRRLVQQLDTSAEIPADTVAILQRLTSRERTIIQLVSSGARNKEIAQR
LCISEHTVKAHISSIFRKTESRNRVELLRWAQTYQSHCELVS
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaaatattgatgagttggtgtttttgcaccaaatcgcagcaccttgccattta
gctattttggcagaatctatcggtttaaaaactcgaattgtaaagcacgctgctgagctt
gagttagaaaaaaaatccaacaacttttatcttgtttcacaaaaaggtgcggccttagac
agtaagggcattccgttgttggtatcgcgtttagttgagcatgtccctgtagcattatac
caagttgaacgtggatcacttgatcaagagtctgcattgctcctgggggtgcggggttta
ttatacagtgaccaacgcatggatttaatgctgactggtttgcgtaaaatggtttctgac
gaattgtggtatgaccgtccattgatcagtaaaatttttagacgtttagtccagcagtta
gataccagtgctgaaatcccagccgatactgttgccatcctccaaagattgaccagccga
gagagaaccattattcagcttgtctctagcggcgcgcgtaataaagaaattgctcagcgc
ctgtgtattagtgaacatactgttaaagcacatatctcatcaattttccgtaaaacggag
tctcgtaaccgagttgagttattgcgttgggcacaaacctatcaaagccattgtgaatta
gtgagttaa
DBGET
integrated database retrieval system
