Shewanella frigidimarina: Sfri_1946
Help
Entry
Sfri_1946 CDS
T00395
Name
(GenBank) choline dehydrogenase
KO
K00108
choline dehydrogenase [EC:
1.1.99.1
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr00260
Glycine, serine and threonine metabolism
sfr01100
Metabolic pathways
Module
sfr_M00555
Betaine biosynthesis, choline => betaine
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09100 Metabolism
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
Sfri_1946
Enzymes [BR:
sfr01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.99 With unknown physiological acceptors
1.1.99.1 choline dehydrogenase
Sfri_1946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GMC_oxred_N
GMC_oxred_C
FAD_binding_2
Pyr_redox_3
Thi4
Lycopene_cycl
NAD_binding_8
Pyr_redox_2
DAO
FAD_oxidored
HI0933_like
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
ABI71792
UniProt:
Q082M3
LinkDB
All DBs
Position
complement(2309678..2311360)
Genome browser
AA seq
560 aa
AA seq
DB search
MSNEYDYIIVGAGSAGCVLANRLTENPDNKVLILETGGSDKSIFIQMPTALSIPMNTKKY
AWQFETEAEPHLDNRRMHCPRGKVLGGSSSINGMVYVRGHARDFDEWQQQGAKDWDYAHC
LPYFKKAETWSFGGNVYRGDKGPLAVNNGNEMKNPLYQAFVDAGVDAGYLATDDYNASQQ
EGFGPMHMTVKNGVRWSTANAYLRPAMKRPNLTVVTHALVHKVIMQGKTAVGVRYERKGE
LIDVNCNKEVILSAGSIGSPHILQLSGIGDSSTLANAGIEQVHQLPGVGQNLQDHLEFYF
QFKCLKPISLNGKIDPLNKLFIGARWILNKSGLGATNHFESCGFIRSKAGLEWPDLQYHF
LPAAMRYDGKEAFAGHGFQVHIGHNKPKSRGAVTVVSNDAKVAPQIQFNYLSHQDDIEGF
RACVRLTREIINQPGLDEYRGEEIQPGLAIQTDEEIDRFVRSSVESAYHPSCSCKMGEDE
MAVVDSETKVHGINGLRVVDSSIFPTIPNGNLNSPTIMVAERAADIILGNKPLAPSLAKV
TIAKQWQTSQRLQAPKRQID
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatgaatacgattatattattgtcggtgccggtagcgcaggttgtgtattagcc
aaccgcttaacggaaaatccagacaataaagtcctgatacttgaaaccggtggtagcgac
aagagcatttttatccaaatgccaaccgccctttcaattcccatgaatactaaaaagtat
gcatggcagtttgaaaccgaagccgaaccacatttggacaatcgccgtatgcattgcccg
cgtggcaaagtgttaggcggttcatcatcaatcaatggcatggtctacgtacgtggtcat
gcgcgtgattttgatgagtggcaacaacaaggtgcaaaagactgggattatgctcactgt
ctgccttactttaagaaagctgaaacatggtcttttggcggtaatgtttatcgcggtgat
aaaggcccattagcggttaataacggtaatgaaatgaaaaacccgttatatcaagctttt
gttgatgcaggtgtcgatgccggctacctagccactgatgattacaatgccagtcagcaa
gaaggctttggcccaatgcacatgaccgttaaaaacggcgtacgttggtctacggcaaat
gcgtaccttcgccctgcaatgaaacgccctaatttaaccgtggtcactcatgcgcttgtg
cataaagtgattatgcaaggtaaaacggctgtcggcgttcgttacgaacgtaaaggcgag
ttgattgatgttaactgcaataaagaagtgattttatctgcaggttcaattggttcaccg
catattttacaactgtcgggtattggtgattcaagcacattagctaacgctggaattgag
caagtacatcaattacctggtgttggtcagaatctgcaagaccacttagagttttacttc
caatttaagtgcttaaagccgatatcgcttaatggcaaaattgatccgttaaacaaattg
tttattggtgctcgctggattttaaataagtcaggtttgggtgcaactaaccattttgaa
tcgtgtggttttatccgctcaaaagcgggcttagagtggcctgatttacagtaccacttc
ttacctgctgccatgcgttacgacggaaaagaagcgtttgctggccatggtttccaagtt
catattggccacaataaacctaaaagccgtggcgcagtaacggttgtatcaaatgatgcc
aaggttgccccacaaattcagttcaattatttatcgcatcaagatgatattgaaggcttt
agagcgtgtgttcgtttaacccgtgaaattattaatcaaccgggtttagatgaatatcgt
ggtgaagaaattcaaccaggcttagcaatacagacagatgaagaaatagaccgttttgtt
agaagctcagtagaaagcgcttaccacccttcttgctcatgcaaaatgggtgaagatgag
atggcagttgtcgactcggaaacaaaagtacatggtattaatggtttacgagtagttgat
tcgtcaatttttccgaccattccaaatggcaatttgaactccccgacgataatggtcgcc
gagcgcgctgccgatattattttaggcaacaaacctcttgcgccaagtttggcaaaagtg
actattgctaagcaatggcaaacatcacaacgattacaagcgcctaaacgacaaattgat
taa
DBGET
integrated database retrieval system
