Shewanella frigidimarina: Sfri_2407
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Entry
Sfri_2407 CDS
T00395
Name
(GenBank) DNA polymerase III, subunits gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03030
DNA replication
sfr03430
Mismatch repair
sfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sfri_2407
03430 Mismatch repair
Sfri_2407
03440 Homologous recombination
Sfri_2407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfr03032
]
Sfri_2407
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_2407
Enzymes [BR:
sfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sfri_2407
DNA replication proteins [BR:
sfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Sfri_2407
DNA repair and recombination proteins [BR:
sfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Sfri_2407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNA_pol3_tau_5
AAA
AAA_22
RuvB_N
AAA_5
AAA_16
AAA_14
DNA_pol3_delta
ResIII
AAA_2
PIF1
AAA_assoc_2
AAA_18
AAA_7
TsaE
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ABI72252
UniProt:
Q080R3
LinkDB
All DBs
Position
complement(2871300..2874119)
Genome browser
AA seq
939 aa
AA seq
DB search
MSYQVLARKWRPAKFEQMVGQSHVLMALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAK
GLNCETGVTATPCGECSSCIEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRF
KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPHKLPVTVLSRCLQFNLKSLSQ
DEISKQLEYVITQEKLPFESQALSLLAKAANGSMRDALSLTDQAIAFGSGQVMLTQVQTM
LGSIDEQHVLALLKALCDADVGPLMQTVAKVLAFGADAEEVLRSLLELLHQITLTQFAPA
AAQQSLFSEQIVAFAQQLAPEQVQLYYQMLLNGRKDLPFAPDPKSGLEMALLRAVAFTPE
KQVKRWVTTTPANIDLSVIDHASTSTQEVIETGPKPDALPQAHYGLTTAAQAIQAEVLPT
AEVEDADPLDDIAVEPSLAAEQALLLDQAQSLGFDSLPLESVDMHTDQLVNDDAEVDVVN
ATSSDNVVHSADAEATDESSTKNVISDVIESEEVAEQPALAPSTADTNSLENSQSSDSAD
NSSLDAYSFMDYNEADDPSMEYQPSDHDEYVAFSASSEATDVNHVTEASESMSKPKTVNH
LADDNSDLISDDARQNLASEDDNLDDFLDEVLASRDSLIADVGALQQQEELAKKESTKTI
SSRVSKAAAASTSPTAATEPSGSDKSEPAPKASEASTATLSGTDKSQVVTDYDRPPWVAP
KEGENVNAFADTNQETKPAVETTLQPSNSVSQQAGHQHQKPASTQSLAADPQNINAEPVI
QSNVLAKFEPHSIQGDEVDLHWYKIMTNVSVGGRVRQLGVNSVCPTLSNPIVLVLKPDQK
HLSAQTAIDQLQVALSEYLERPTEVEIQIGVVQKRETPLELRKRFHRELIVQAQQSILLD
DNVQWMIQHLSAQLDSDTIEYPSEQLGQIAQDIALINAS
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgtcttaccaagtactagcccgcaaatggcgtccagctaaatttgaacaaatggtcggc
caatcccatgtattaatggcattaaccaatgcattgagccaacaacgtttacatcatgct
tatctgtttactggtacccgcggcgtgggtaaaaccagtttggcacgtttgtttgctaaa
ggtcttaattgtgaaacaggcgttactgctacgccgtgcggtgaatgctctagttgtatt
gaaattgcccaaggccgatttgttgatttaattgaagtcgatgccgcttcccgcaccaaa
gttgatgatactcgcgaacttctcgacaatgtacagtatcgcccatcccgtggtcgtttt
aaggtgtacttaattgatgaagtacacatgttgtcgcgcagcagttttaacgcactacta
aagaccttagaagagcctcctgagcacgttaagtttttattagcgacaaccgatccgcac
aaactgccggttactgtgctatctcgttgtttacagttcaatttgaaaagtttatcgcag
gacgaaattagcaagcaacttgagtatgttatcactcaagaaaagttaccatttgagtcg
caagcactgagtttattagccaaagcggccaatggcagtatgcgtgatgcgctcagttta
acggatcaagccatagcatttggcagtggccaagtgatgcttacacaagtgcaaaccatg
ttgggcagtattgatgagcaacatgtgctcgcgttattaaaagccttgtgtgatgccgat
gttgggccattaatgcaaaccgtggcaaaagtattggcatttggtgcagatgccgaagaa
gtactacgcagcttattagaactattacatcaaatcaccttaactcaatttgccccagcc
gcagcacaacaatcgctgtttagtgagcaaattgtggcattcgcgcagcaattagcacct
gaacaagtacagctttattaccaaatgctgcttaacggccgtaaagatttaccctttgct
cccgatcctaaatcgggcttggaaatggcactgcttcgtgcggtagcctttacgcccgag
aaacaagtaaaacgttgggtaacaacgacaccagctaatattgatttaagcgttatcgat
cacgcatcaacttcaacacaagaggtcattgaaacaggcccaaagcctgatgctctgcct
caagcgcattatggtttaacgacagcagcacaagctattcaggctgaagtgttgccgact
gccgaagttgaagatgctgatcctctcgacgatatcgctgttgagccttcgttggcggct
gagcaagctttattgttggaccaagcacaaagcttagggtttgattcattgccgctagaa
agtgtcgatatgcacactgaccagcttgttaatgatgatgccgaagttgacgttgttaat
gcaacttcatctgataatgttgttcatagcgcagatgctgaagcaacggatgaatccagt
actaaaaatgtgataagcgatgttatcgagtctgaagaagttgcagagcaacctgcattg
gcgccaagtacggcagacaccaattcattagaaaatagtcaatccagtgatagtgcagat
aatagctcacttgatgcctattcttttatggattataacgaagcagatgatccgtcaatg
gaatatcaaccctctgatcatgacgaatatgttgcgttttctgcttcaagtgaggcaact
gacgttaaccatgttactgaagcttcggagtcgatgtctaaaccgaaaacggttaatcat
ctcgctgacgataacagcgacttgataagtgatgatgcacgtcaaaacctcgcgagtgaa
gatgataacttagacgactttttagatgaagtgctagccagtcgagattctctcattgca
gatgttggcgcattacagcaacaagaagaactggccaaaaaagagtcgacaaaaacaatc
agttctagagtgagcaaagcggctgcggcatcaacatcaccaacggccgctactgagcct
tcaggttctgataagtcagaacctgcacctaaggccagcgaagcgtcaacggcaacactc
agcggaacagacaagtctcaagttgtgacagattatgataggccaccttgggtcgcgccc
aaagaaggtgagaacgttaatgcgtttgcagatactaatcaagagactaaaccagcagtt
gaaacaacacttcaaccatcgaattctgtcagtcagcaagccggtcatcaacatcaaaaa
ccagccagcacacaatcacttgctgccgatccgcaaaacattaatgcagagccggtgatt
caatctaatgtgcttgccaaatttgaaccacacagcattcaaggcgatgaagttgattta
cattggtataaaataatgactaatgtgtctgttggcgggagagttaggcaattaggggtg
aactccgtgtgcccaacattgtcaaatccaatagtattagtgttaaaaccagaccagaaa
catttgtctgcgcaaactgctatcgatcaattacaagtggcattatctgagtaccttgag
cgaccaactgaagttgaaatccagattggtgtggtgcaaaaacgagaaacaccgcttgag
ttacgcaaacgctttcatcgggagctcattgtgcaagcgcaacaatctattttgcttgat
gacaacgttcagtggatgatccaacacttatcggctcagttagacagtgacacgattgaa
tatccatcggagcaactagggcaaatagcgcaggatattgcactaatcaacgcttcataa
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