Shigella flexneri Shi06HN006 (serotype Yv): SFyv_0829
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Entry
SFyv_0829 CDS
T03315
Name
(GenBank) PhrB
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
sfs
Shigella flexneri Shi06HN006 (serotype Yv)
Brite
KEGG Orthology (KO) [BR:
sfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfs03400
]
SFyv_0829
Enzymes [BR:
sfs01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
SFyv_0829
DNA repair and recombination proteins [BR:
sfs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
SFyv_0829
Prokaryotic type
SFyv_0829
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
AIL39474
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Position
complement(614275..615693)
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AA seq
472 aa
AA seq
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MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRKWETHNMSPRQAELINAQLN
GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA
LRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGS
IKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRLSA
SLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLSELIWREFYRHLMTYYPSLCKHRPFIA
WTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDW
REGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFIRRWL
PELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARKGK
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgactacccatctggcctggtttcgccaggatttacgtctgcacgataatctcgcactg
gctgccgcctgccgcaattcgtctgcacgcgtgctggcgctgtatatcgctacaccacgc
aagtgggagacgcataacatgtcgccgcgtcaggctgaacttatcaatgctcaactgaat
gggctacaaatcgcgctggcggaaaaaggtattcctttattgttccgtgaagtggatgac
tttgtcgccagtgtcgaaatagttaaacaggtgtgcgcggaaaacagcgttactcatctt
ttttataactatcagtatgaggtgaatgagcgagcgcgggatgtggacgttgaaagagcg
ctgcgtaacgtggtgtgtgaaggatttgatgacagcgtgatcctgccgccgggggcggtg
atgaccggcaatcacgagatgtacaaagtctttacgccttttaagaatgcctggctgaaa
cggctgcgggaagggatgccggagtgcgtcgctgcaccaaaagttcgtagtagcggatcg
ataaagcccgcgccatccattacgctgaattatcctcgtcagtctttcgatactgcgcat
ttcccggtggaagaaaaagcggcgattgcgcaattacgccagttttgcgagaacggtgct
ggagagtatgagcaacaacgagattttccggcagtggaaggcaccagccgtttgtccgcc
agcttggcaacgggcgggttatcgcctcgccagtgtttgcatcgcttgttggcggaacag
ccgcaggcgctggacggtggggccggtagtgtctggcttagtgagctgatctggcgcgag
ttctaccgtcatctgatgacgtattacccctcgttgtgtaaacatcgtccatttattgcc
tggacggatcgtgtgcagtggcaaagcaatcccgcacatttacaggcctggcagaaaggc
aaaacgggatacccgattattgatgccgctatgcgtcagcttaacagcactggctggatg
cataaccggctacggatgattacagccagttttctggtgaaagatttgttgatcgactgg
cgcgaaggcgagcgatatttcatgtcgcagctgattgatggtgatttggcagctaataac
ggtggctggcagtgggcggcttctacgggtactgatgctgcgccgtattttcgtattttc
aatccgataactcagggcgagaaatttgaccgtgagggcgagtttattcgtcgatggtta
ccggagctgcgcgatgtaccagggaaagcggtgcatgagccgtggaagtgggcgcagaaa
gcaggtgtgaagctggattatccgcaaccgatagtcgagcacaaagaggcgagagtacaa
acgttggcagcgtatgaggcggcgcggaaggggaaataa
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