Shigella flexneri NCTC1 (serotype 2a): NCTC1_04569
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Entry
NCTC1_04569 CDS
T03751
Symbol
fimD_5
Name
(GenBank) Outer membrane usher protein fimD,Outer membrane usher protein fimD precursor,outer membrane usher protein,Fimbrial Usher protein
KO
K07347
outer membrane usher protein
Organism
sft
Shigella flexneri NCTC1 (serotype 2a)
Pathway
sft02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
sft00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NCTC1_04569 (fimD_5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sft02000
]
NCTC1_04569 (fimD_5)
02044 Secretion system [BR:
sft02044
]
NCTC1_04569 (fimD_5)
02035 Bacterial motility proteins [BR:
sft02035
]
NCTC1_04569 (fimD_5)
Transporters [BR:
sft02000
]
Other transporters
Pores ion channels [TC:
1
]
NCTC1_04569 (fimD_5)
Secretion system [BR:
sft02044
]
Chaperone-usher system
Type 1 pilus assembly protein
NCTC1_04569 (fimD_5)
Bacterial motility proteins [BR:
sft02035
]
Pilus system
Fimbrial proteins
NCTC1_04569 (fimD_5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Usher
PapC_C
Motif
Other DBs
NCBI-ProteinID:
CDX09632
LinkDB
All DBs
Position
1:complement(4294854..4296593)
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AA seq
579 aa
AA seq
DB search
MIHGIARGTAQVTIKQNGYGIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFT
VPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADR
YRAFNFGIGKNMEALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGY
RYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGR
TSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVN
IPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGG
DGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVV
LVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVV
PTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPL
AGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
gtgatccacggtattgctcgtggtactgcacaggtcactattaaacaaaatggatatggc
atttataatagtacggtgccaccggggccttttaccatcaacgatatctatgccgcaggt
aatagtggtgacttgcaggtaacgatcaaagaggctgacggcagcacgcagatttttacc
gtaccctattcgtcagtcccgcttttgcaacgtgaagggcatactcgttattccattacg
gcaggagaataccgtagtggaaatgcgcagcaggaaaaaccccgctttttccagagtaca
ttactccacggccttccggctggctggacaatatatggtggaacgcaactggcggatcgt
tatcgtgcttttaatttcggtatcgggaaaaacatggaggcactgggcgctctgtctgtg
gatatgacgcaggctaattccacacttcccgatgacagtcagcatgacggacaatcggtg
cgttttctctataacaaatcgctcaatgaatcaggcacgaatattcagttagtgggttac
cgttattcgaccagcggatattttaatttcgctgatacaacatacagtcgaatgaatggc
tacaacatcgaaacacaggatggagttattcaggttaagccgaaattcaccgactattac
aacctcgcttataacaaacgcgggaaattacagctcaccgttactcagcaactcgggcgc
acatcaacactgtatttgagtggtagccatcaaacttattggggaacgagtaatgtcgat
gagcaattccaggctggattaaatactgcgttcgaagatatcaactggacgctcagctat
agcctgacgaaaaacgcctggcaaaaaggacgggatcagatgttagcgcttaacgtcaat
attcctttcagccactggctgcgttctgacagtaaatctcagtggcgacatgccagtgcc
agctacagcatgtcacacgatctcaacggtcggatgaccaatctggctggtgtatacggt
acgttgctggaagacaacaacctcagttatagcgtgcaaaccggctatgccgggggaggc
gatggtaatagcggaagtacaggctacgccacgctgaattatcgcggtggttacggcaat
gccaatatcggttacagccatagcgatgatattaagcagctctattacggagtcagcggt
ggggtattggctcatgccaatggcgtaacgctggggcagccgttaaacgatacggtggtg
cttgttaaagcgcctggcgcaaaagatgcaaaagtcgaaaaccagacgggggtgcgtacc
gactggcgtggttatgccgtgctgccttatgccactgaatatcgggaaaatagagtggcg
ctggataccaataccttggctgataacgtcgatttagataacgcggtcgctaacgttgtt
cccactcgtggggcgatcgtgcgagcagagtttaaagcgcgcgttgggataaaactgctc
atgacgctaactcacaataataagccgctgccgtttggggcgatggtgacatcagagagt
agccagagtagcggcattgttgcggataatggtcaggtttacctcagcggaatgccttta
gcgggaaaagttcaggtgaaatggggagaagaggaaaatgctcactgtgtcgccaattat
caactgccaccagagagtcagcagcagttattaacccagctatcagctgaatgtcgttaa
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integrated database retrieval system
