Syntrophobacter fumaroxidans: Sfum_0876
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Entry
Sfum_0876 CDS
T00418
Name
(GenBank) RNAse III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
sfu
Syntrophobacter fumaroxidans
Brite
KEGG Orthology (KO) [BR:
sfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfu03019
]
Sfum_0876
03009 Ribosome biogenesis [BR:
sfu03009
]
Sfum_0876
03036 Chromosome and associated proteins [BR:
sfu03036
]
Sfum_0876
Enzymes [BR:
sfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
Sfum_0876
Messenger RNA biogenesis [BR:
sfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sfum_0876
Ribosome biogenesis [BR:
sfu03009
]
Eukaryotic type
90S particles
RNase
Sfum_0876
Prokaryotic type
rRNA processing factors
Sfum_0876
Chromosome and associated proteins [BR:
sfu03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
Sfum_0876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
ABK16573
UniProt:
A0LGM1
LinkDB
All DBs
Position
complement(1082176..1082904)
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AA seq
242 aa
AA seq
DB search
MKPSDGLEALQNLLGYRFGDEGLLHRALVHRSYLHENPHLDEKDNETLEFLGDAVLGLAI
SHFLLEQFPDYNEGELSRLRSAIVNERELTRIAVELNLGEYLLLGKGEEMTGGRRKASLL
ADSLEALLASIYLDGGLDAVLGVIKKLFDVYLRFEKREHVLKALDKDYKTQLQELTQARY
KLTPVYVLDREEGPDHDKTFHMNVVLEGQVLAGGSGKSKKDAQQAAAEKALQIIAADSWS
LD
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgtccgacgggcttgaggcgcttcagaaccttctcggctaccgtttcggcgat
gaaggactccttcaccgggccctggtgcaccggtcctacctgcacgagaatccacacctg
gacgagaaggataacgaaaccctcgagtttttgggggatgcggtgctggggcttgcgatc
agccacttcctgttggaacagtttccggactacaacgaaggggagctctcccgtctccgg
tccgccatcgtcaacgaacgggagttgacccggatcgccgtcgagctcaatctcggagaa
tacctgttgctgggaaagggcgaggagatgaccggcggacgccggaaagcctccttgctg
gccgacagcctggaagctctgctcgcgtccatctacctcgatggcggcctggacgcggtt
ctcggcgtgatcaagaagctcttcgacgtgtatcttcggttcgaaaagcgggaacatgtt
ctcaaggcgctggacaaggactacaaaacccaactgcaggaactgacccaggcccggtac
aagctcactccggtgtatgttctggaccgtgaggaggggccggaccacgacaagaccttt
cacatgaacgtggtcctcgaagggcaggtgttggccggcggatcgggcaaaagcaagaaa
gacgcccagcaggccgccgccgagaaggcactgcaaatcattgccgcggattcatggtcc
cttgactga
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