Syntrophobacter fumaroxidans: Sfum_1597
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Entry
Sfum_1597 CDS
T00418
Name
(GenBank) beta-lactamase domain protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sfu
Syntrophobacter fumaroxidans
Pathway
sfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sfum_1597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfu03019
]
Sfum_1597
Messenger RNA biogenesis [BR:
sfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sfum_1597
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ABK17284
UniProt:
A0LIN2
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Position
1945645..1947330
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AA seq
561 aa
AA seq
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MMQKQEDVQPSALKIIPLGGLGEIGLNMMVLEYEDTIVVIDAGLMFPEEDMLGIDIVIPD
FTYLQKNRNRVRALLVTHGHEDHIGAIPFLLREVPVPIYATTLTLALIKEKLKEHGLLER
SELCRVEPRETIGIGPFDIEFIQVCHSIPDGVGLAIRTPVGVIIHSGDFKIDNTPVDGRR
FDMARFGKYGEQGVLALFADSTNVERPGYTLSEKDVGATLRDIFRECSGRIIVAVFASNL
HRIQQVVQLAREFGRRVLLNGRSMVINVRIARELGYIDFPGDDEITLQDLAYLPDSEVLM
LTTGSQGEPMSALTRMAFNDHKKLKVKPGDTIVLSSKFIPGNERTIQNIINHLYRHGAEV
IYEQVRDIHVSGHAYREELKAMINVVQPNYFIPVHGEFRHLVKHRQLAVDTGVPEENCLL
IENGGVVEFYPDGVLTGEHVETGRVLVDGKGVGDVGGLVLRDRRHLSEDGMVIASLVFNK
ETQELVSGPDILSRGFIHEEAKPELLDDAKCVIFETIDKQLSEGAELDCTVLQEDIRREL
KRFFNRVLDRRPVIYPIVVEI
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagaagcaggaagacgtgcaaccatccgctctcaagatcattcccctcggagga
ctcggtgaaatcggcctcaatatgatggtgctggaatacgaggacaccatcgtcgttatc
gatgccggcctcatgttccccgaagaggacatgctgggaatcgacatcgtcatccccgat
ttcacctatttacagaagaacaggaaccgtgttcgcgctctccttgtgacccacggtcac
gaggaccacatcggcgccatacccttcctgctgcgcgaagtcccggtacccatctatgcg
acgacgctcaccctggcgctcatcaaggaaaagctcaaggaacacggtctgctggagcgc
tcggagctttgccgggtcgaaccgagggagacgatcggcatcggccccttcgacatcgaa
ttcatccaggtgtgccacagtatcccggatggagtggggttggcgattcgcacgccggtg
ggggtcatcatccattcgggagatttcaagatcgacaacacgcctgtggacggccggcgc
ttcgacatggcccgttttgggaaatacggcgaacagggcgtgcttgcactgtttgcggat
tccaccaacgtggagcggccggggtacactctgtcggaaaaggatgtcggggcgacattg
agggatatcttcagggagtgctcgggccggatcattgtggcggtttttgcgagcaatctg
caccgcatccagcaggtggttcagctggcgcgcgagttcggtcggagagtcctcctcaac
ggccgttccatggtgatcaatgtccggattgcaagagagctcgggtatatcgacttcccc
ggcgatgatgagatcacgctgcaggacctggcctacctgcccgattcggaagtgctgatg
ctgacgaccggaagccagggagagcccatgagcgccctgaccaggatggccttcaacgat
cacaagaagttgaaggtcaagccgggggatacgatcgtgctgtcctccaagttcataccc
ggcaacgagaggacgattcaaaacatcatcaaccacctgtaccggcacggggccgaggtc
atatacgaacaggtgcgggacatccacgtgtccggccatgcctaccgtgaagagctcaaa
gccatgatcaacgtggtccagcccaactatttcattcccgttcacggtgaattccggcat
ctcgtgaagcaccgccagcttgccgtcgataccggggtcccggaggagaactgcctgctg
atcgaaaacgggggcgttgtggagttctatcccgacggagtgctcaccggcgagcacgtg
gagacgggccgcgtcctggttgacggcaaaggcgtgggcgacgttggcggactcgtgctc
cgggatcggcggcatctttccgaggacgggatggtgatcgcctccctcgtgttcaacaag
gaaacgcaggaactggtgagcggacccgacattctcagcaggggcttcattcacgaagag
gccaaaccggagcttctcgacgatgcgaaatgcgtgattttcgaaaccatcgacaagcag
ctgagtgagggtgcggagctcgattgtacggtgctccaggaggatatccggcgggagctg
aagcgttttttcaacagggtgctggatcggcgcccggtgatctacccgattgtggtggaa
atatga
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