KEGG   Spiroplasma floricola: SFLOR_v1c00480
Entry
SFLOR_v1c00480    CDS       T05283                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
sfz  Spiroplasma floricola
Pathway
sfz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sfz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SFLOR_v1c00480 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sfz03021]
    SFLOR_v1c00480 (rpoC)
   03400 DNA repair and recombination proteins [BR:sfz03400]
    SFLOR_v1c00480 (rpoC)
Enzymes [BR:sfz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SFLOR_v1c00480 (rpoC)
Transcription machinery [BR:sfz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SFLOR_v1c00480 (rpoC)
DNA repair and recombination proteins [BR:sfz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SFLOR_v1c00480 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: AUB31109
UniProt: A0A2K8SCB9
LinkDB
Position
46502..50251
AA seq 1249 aa
MGNSNKRMIKIELASPDVIRSWSRGEVTKPETINYKTLKTEKEGLFDERIFGPTRNYECT
CGKYKKVKNKGKICERCGVEITESIVRRERMGHIELEEPVTHIWMLKVAPSRIASILDLK
TKEVEEVVYFVSYIVLDPGNSKHLKKGMVLDLGNAKASLKTREKLLKTLEDIRVNIEPDT
FAWKRADNLINQLRTPNVPFSMDEASTFISRYINAKFGIGASAIEDLLKNINLDKEIERI
REDLKDKKGSSEQNKLMKRLEVLDSLKKSKSRPEWMVLHVIPVIPPDIRPIIQLDGGRFT
TSEINDLYRRIIIRNERLKKVKSMGAPSIIVNNEKRMLQEAVDALLDNERKPRPVTGKDK
RPLKSLTSILKGKQGRFRQNLLGKRVDYSGRSVIAIGPDLKMYQAGIPRDMAITLFKPFI
IRRLQERDFAENVKVAEKMILTNDSKVWDILEEVIKDRPVLLNRAPTLHRLGIQAFEPKL
VKGKAIRLHPLVTTAFNADFDGDQMAVHLPISDEAVAEARALMLGSKAILGPKDGKPIVT
PTQDMILGNYYITTEEKDVKGQGTLFTSYEEVKIAYETDSVSLNAIVAIPVSELKNKKIS
DEHKNKFLITTVGKIFFNQMFVEEFPWIVNSNINNAEMEIEKFIVDENTDIRSFIENEYV
IQQPIKKKELSLIIERYFKLFGAQKTAQMLDNMKDLGFKFSSKSGTTISAADVVAYTEKF
DEFKVADEKVSQITEFYNMGMLTKTEKKRRVINVWSNVKDKIQNRLEEVLKKDPKNPVFV
MADSGARGNVSNFTQLVGMRGLMNDPKGDIKEIPIKSSFREGLTVSEYFISTHGARKGMA
DVALKTADSGYLTRRLVDISQEIIVTEDDCKTSKGFDVHSIIETKHDNIIVPLKDRLVGR
FTFSDVIDSNGNLIVEENSLITLSLADEIINAGIEEVQIRTVLTCDTNRGVCRKCYGVNL
ATGEVVTIGEPVGVIAAQSIGEPGTQLTMRTFHTGGVAGGADITQGLPRIKELLDVTNPK
GSIAIISQIDGVIKEATEEDGIITIVVSSDQDERKYKSQYGAILRVTKGETVTRGQKLTE
GAINIKELLEVARIEDVQNYILKEVQKVYRLQGIEISDKYIEIIVKQMLNKVKIIDSGET
ELLPGEVISSRAFRNEVKNAIVAGKKPPLAKHVIFGIKKAPLESDSWLSSASFQDTARVL
VKAVIKGKVDKLEGLKENIMLGNLIPAGTGLTGSADIIKKGKETYNSEY
NT seq 3750 nt   +upstreamnt  +downstreamnt
atgggaaattcaaataaaagaatgattaaaattgaactagcttctccagatgtgatcaga
agttgatcacgtggtgaagttactaaaccagaaacaattaactacaaaacattaaaaact
gaaaaagaaggtttatttgatgaaagaatctttggaccaacaagaaattatgaatgtact
tgtggtaaatataaaaaagtaaaaaataaaggaaaaatttgtgaacgttgtggagtagaa
attactgaatcaattgttagacgtgaaagaatgggtcacattgagttagaagaaccagtt
actcatatttgaatgttaaaagttgctccttcaagaattgcttcaattttagatttaaaa
actaaagaagttgaagaagtagtttactttgtaagttatatagttttagatccaggaaat
tcaaaacaccttaaaaaaggtatggttttagatttaggaaatgctaaagcaagtttaaaa
actagagaaaaattattaaaaactttagaagatattagagttaatattgaaccagataca
tttgcttgaaaaagagcagataatttaataaatcaattaagaactccaaatgtgcctttc
tcaatggatgaggcatctacttttatttcaagatatattaatgctaaatttggtattgga
gcaagtgctattgaagacttacttaaaaatattaatttagataaagaaattgaaagaatt
agagaagatttaaaagataaaaaaggttcatcagaacaaaataaattaatgaaacgtctt
gaagttttagattcattaaaaaaatcaaaatcaagaccagagtgaatggttttacatgta
attccagttattcctccagacattagaccaattattcaattggatggtggtagatttact
acttctgaaattaatgacttatatagaagaattatcattagaaatgaacgtttaaaaaaa
gttaaatcaatgggagcaccaagtattattgttaacaacgaaaaacgtatgttacaagaa
gctgttgatgctttattagataatgaacgtaaaccaagaccagttacaggtaaagataaa
agaccattaaaatctttaacatcaattttaaaaggaaaacaaggaagattccgtcaaaac
cttttaggaaaacgtgttgactattcaggtcgttcagttattgctattggaccagattta
aaaatgtatcaagcaggtattccaagagatatggctattacattatttaaaccctttatc
attagaagattgcaagaaagagactttgctgaaaatgtaaaagttgcagaaaaaatgata
ttaacaaatgattcaaaagtttgagatatcttagaagaagtaattaaagatagaccggta
ttattaaaccgtgctcctactcttcaccgtttaggaattcaagcatttgaaccgaaacta
gttaaaggtaaagcaattagacttcaccctctagttacaacagcttttaacgccgacttt
gacggggaccaaatggctgttcacttaccaataagtgatgaagcagttgctgaagctaga
gcacttatgttaggatcaaaagcaattcttggaccaaaagatggtaaaccaattgttact
cctactcaggatatgattttgggaaattactatataacaactgaagaaaaagatgttaaa
ggtcaaggaacattatttacaagttatgaagaagtaaaaatagcttacgaaactgattca
gtttcactaaatgctattgttgcaattccagttagtgaattaaaaaataaaaaaatatct
gatgaacataaaaataaatttttaattacaacagttgggaaaatctttttcaaccaaatg
tttgtagaggaattcccatgaattgttaattcaaatattaataatgctgaaatggaaatt
gagaaatttattgttgatgaaaatacagatatcagaagttttattgaaaatgaatatgta
atccaacaaccaattaagaaaaaagaattatctttaattattgaaagatactttaaatta
tttggggctcaaaaaacagctcaaatgttagataatatgaaggatttaggatttaaattc
tcatctaaatcaggaacaacaatcagtgctgctgacgttgttgcttatacagaaaaattt
gatgaatttaaagtagcagatgaaaaagtttcacaaatcactgaattctataatatgggt
atgttaacaaaaacagaaaaaaaacgtagagttattaatgtttgatcaaatgtaaaagat
aaaattcaaaatagacttgaagaagttcttaaaaaagatccaaaaaacccagtatttgtt
atggccgattctggagctcgtggtaacgtatctaactttacacaattagtaggtatgagg
ggtcttatgaacgaccctaaaggtgatattaaagaaattccaattaaatcatcattccgt
gaaggtttaacagtgtcagaatactttatttctactcacggagcaagaaaagggatggcc
gacgttgccttgaaaactgctgactcaggttatttaacaagaagacttgttgatatttca
caagaaattattgttacagaagatgattgcaaaacttcaaaaggttttgatgttcactca
attattgaaacaaaacacgacaatattattgttccattgaaagatagacttgttggaaga
tttactttcagcgatgtaattgattcaaatggaaatttaattgttgaagaaaattcatta
attacattatcattagctgatgaaattattaatgcaggtattgaagaagttcaaattaga
actgtattaacatgtgatacaaaccgtggtgtatgtagaaaatgttatggtgtaaattta
gcaactggtgaagttgttacaattggtgaaccagttggagttattgcagctcaatcaatt
ggtgaacctggtactcagctaactatgcgtactttccataccggaggggttgctggggga
gcagatattacacaagggctacctcgtattaaagaattacttgacgttacaaatccaaaa
ggttcaattgctataatttcacaaattgatggagttattaaagaagcaactgaagaagat
ggaattataacaattgttgtttcatcagatcaagatgaaagaaaatacaaatcacaatat
ggagctattttaagagtaacaaaaggtgaaactgtaactcgtggtcaaaaattaactgaa
ggggcaataaacataaaagaattattggaagttgcaagaattgaagatgttcaaaactat
atcttgaaagaggtacaaaaagtttatcgtctacaagggattgaaatttcagataaatat
attgaaattattgttaaacaaatgttgaataaagttaaaattattgattcaggagaaact
gaattacttccaggagaagttatctcatcaagagcattcagaaatgaagttaaaaatgct
attgttgcaggtaaaaaaccacctcttgcaaaacacgtaatctttggtattaaaaaagca
ccacttgaatcagattcatgattgtctagtgcatcattccaagatacagcaagagttctt
gttaaagctgttatcaaaggaaaagttgataaacttgaaggattaaaagaaaacattatg
ttaggaaatttaattcctgcaggaactggattaactggtagtgcagatattatcaaaaaa
ggtaaggaaacttacaattcagaatattag

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