Spiroplasma floricola: SFLOR_v1c00480
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Entry
SFLOR_v1c00480 CDS
T05283
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sfz
Spiroplasma floricola
Pathway
sfz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SFLOR_v1c00480 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfz03021
]
SFLOR_v1c00480 (rpoC)
03400 DNA repair and recombination proteins [BR:
sfz03400
]
SFLOR_v1c00480 (rpoC)
Enzymes [BR:
sfz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SFLOR_v1c00480 (rpoC)
Transcription machinery [BR:
sfz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SFLOR_v1c00480 (rpoC)
DNA repair and recombination proteins [BR:
sfz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SFLOR_v1c00480 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AUB31109
UniProt:
A0A2K8SCB9
LinkDB
All DBs
Position
46502..50251
Genome browser
AA seq
1249 aa
AA seq
DB search
MGNSNKRMIKIELASPDVIRSWSRGEVTKPETINYKTLKTEKEGLFDERIFGPTRNYECT
CGKYKKVKNKGKICERCGVEITESIVRRERMGHIELEEPVTHIWMLKVAPSRIASILDLK
TKEVEEVVYFVSYIVLDPGNSKHLKKGMVLDLGNAKASLKTREKLLKTLEDIRVNIEPDT
FAWKRADNLINQLRTPNVPFSMDEASTFISRYINAKFGIGASAIEDLLKNINLDKEIERI
REDLKDKKGSSEQNKLMKRLEVLDSLKKSKSRPEWMVLHVIPVIPPDIRPIIQLDGGRFT
TSEINDLYRRIIIRNERLKKVKSMGAPSIIVNNEKRMLQEAVDALLDNERKPRPVTGKDK
RPLKSLTSILKGKQGRFRQNLLGKRVDYSGRSVIAIGPDLKMYQAGIPRDMAITLFKPFI
IRRLQERDFAENVKVAEKMILTNDSKVWDILEEVIKDRPVLLNRAPTLHRLGIQAFEPKL
VKGKAIRLHPLVTTAFNADFDGDQMAVHLPISDEAVAEARALMLGSKAILGPKDGKPIVT
PTQDMILGNYYITTEEKDVKGQGTLFTSYEEVKIAYETDSVSLNAIVAIPVSELKNKKIS
DEHKNKFLITTVGKIFFNQMFVEEFPWIVNSNINNAEMEIEKFIVDENTDIRSFIENEYV
IQQPIKKKELSLIIERYFKLFGAQKTAQMLDNMKDLGFKFSSKSGTTISAADVVAYTEKF
DEFKVADEKVSQITEFYNMGMLTKTEKKRRVINVWSNVKDKIQNRLEEVLKKDPKNPVFV
MADSGARGNVSNFTQLVGMRGLMNDPKGDIKEIPIKSSFREGLTVSEYFISTHGARKGMA
DVALKTADSGYLTRRLVDISQEIIVTEDDCKTSKGFDVHSIIETKHDNIIVPLKDRLVGR
FTFSDVIDSNGNLIVEENSLITLSLADEIINAGIEEVQIRTVLTCDTNRGVCRKCYGVNL
ATGEVVTIGEPVGVIAAQSIGEPGTQLTMRTFHTGGVAGGADITQGLPRIKELLDVTNPK
GSIAIISQIDGVIKEATEEDGIITIVVSSDQDERKYKSQYGAILRVTKGETVTRGQKLTE
GAINIKELLEVARIEDVQNYILKEVQKVYRLQGIEISDKYIEIIVKQMLNKVKIIDSGET
ELLPGEVISSRAFRNEVKNAIVAGKKPPLAKHVIFGIKKAPLESDSWLSSASFQDTARVL
VKAVIKGKVDKLEGLKENIMLGNLIPAGTGLTGSADIIKKGKETYNSEY
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atgggaaattcaaataaaagaatgattaaaattgaactagcttctccagatgtgatcaga
agttgatcacgtggtgaagttactaaaccagaaacaattaactacaaaacattaaaaact
gaaaaagaaggtttatttgatgaaagaatctttggaccaacaagaaattatgaatgtact
tgtggtaaatataaaaaagtaaaaaataaaggaaaaatttgtgaacgttgtggagtagaa
attactgaatcaattgttagacgtgaaagaatgggtcacattgagttagaagaaccagtt
actcatatttgaatgttaaaagttgctccttcaagaattgcttcaattttagatttaaaa
actaaagaagttgaagaagtagtttactttgtaagttatatagttttagatccaggaaat
tcaaaacaccttaaaaaaggtatggttttagatttaggaaatgctaaagcaagtttaaaa
actagagaaaaattattaaaaactttagaagatattagagttaatattgaaccagataca
tttgcttgaaaaagagcagataatttaataaatcaattaagaactccaaatgtgcctttc
tcaatggatgaggcatctacttttatttcaagatatattaatgctaaatttggtattgga
gcaagtgctattgaagacttacttaaaaatattaatttagataaagaaattgaaagaatt
agagaagatttaaaagataaaaaaggttcatcagaacaaaataaattaatgaaacgtctt
gaagttttagattcattaaaaaaatcaaaatcaagaccagagtgaatggttttacatgta
attccagttattcctccagacattagaccaattattcaattggatggtggtagatttact
acttctgaaattaatgacttatatagaagaattatcattagaaatgaacgtttaaaaaaa
gttaaatcaatgggagcaccaagtattattgttaacaacgaaaaacgtatgttacaagaa
gctgttgatgctttattagataatgaacgtaaaccaagaccagttacaggtaaagataaa
agaccattaaaatctttaacatcaattttaaaaggaaaacaaggaagattccgtcaaaac
cttttaggaaaacgtgttgactattcaggtcgttcagttattgctattggaccagattta
aaaatgtatcaagcaggtattccaagagatatggctattacattatttaaaccctttatc
attagaagattgcaagaaagagactttgctgaaaatgtaaaagttgcagaaaaaatgata
ttaacaaatgattcaaaagtttgagatatcttagaagaagtaattaaagatagaccggta
ttattaaaccgtgctcctactcttcaccgtttaggaattcaagcatttgaaccgaaacta
gttaaaggtaaagcaattagacttcaccctctagttacaacagcttttaacgccgacttt
gacggggaccaaatggctgttcacttaccaataagtgatgaagcagttgctgaagctaga
gcacttatgttaggatcaaaagcaattcttggaccaaaagatggtaaaccaattgttact
cctactcaggatatgattttgggaaattactatataacaactgaagaaaaagatgttaaa
ggtcaaggaacattatttacaagttatgaagaagtaaaaatagcttacgaaactgattca
gtttcactaaatgctattgttgcaattccagttagtgaattaaaaaataaaaaaatatct
gatgaacataaaaataaatttttaattacaacagttgggaaaatctttttcaaccaaatg
tttgtagaggaattcccatgaattgttaattcaaatattaataatgctgaaatggaaatt
gagaaatttattgttgatgaaaatacagatatcagaagttttattgaaaatgaatatgta
atccaacaaccaattaagaaaaaagaattatctttaattattgaaagatactttaaatta
tttggggctcaaaaaacagctcaaatgttagataatatgaaggatttaggatttaaattc
tcatctaaatcaggaacaacaatcagtgctgctgacgttgttgcttatacagaaaaattt
gatgaatttaaagtagcagatgaaaaagtttcacaaatcactgaattctataatatgggt
atgttaacaaaaacagaaaaaaaacgtagagttattaatgtttgatcaaatgtaaaagat
aaaattcaaaatagacttgaagaagttcttaaaaaagatccaaaaaacccagtatttgtt
atggccgattctggagctcgtggtaacgtatctaactttacacaattagtaggtatgagg
ggtcttatgaacgaccctaaaggtgatattaaagaaattccaattaaatcatcattccgt
gaaggtttaacagtgtcagaatactttatttctactcacggagcaagaaaagggatggcc
gacgttgccttgaaaactgctgactcaggttatttaacaagaagacttgttgatatttca
caagaaattattgttacagaagatgattgcaaaacttcaaaaggttttgatgttcactca
attattgaaacaaaacacgacaatattattgttccattgaaagatagacttgttggaaga
tttactttcagcgatgtaattgattcaaatggaaatttaattgttgaagaaaattcatta
attacattatcattagctgatgaaattattaatgcaggtattgaagaagttcaaattaga
actgtattaacatgtgatacaaaccgtggtgtatgtagaaaatgttatggtgtaaattta
gcaactggtgaagttgttacaattggtgaaccagttggagttattgcagctcaatcaatt
ggtgaacctggtactcagctaactatgcgtactttccataccggaggggttgctggggga
gcagatattacacaagggctacctcgtattaaagaattacttgacgttacaaatccaaaa
ggttcaattgctataatttcacaaattgatggagttattaaagaagcaactgaagaagat
ggaattataacaattgttgtttcatcagatcaagatgaaagaaaatacaaatcacaatat
ggagctattttaagagtaacaaaaggtgaaactgtaactcgtggtcaaaaattaactgaa
ggggcaataaacataaaagaattattggaagttgcaagaattgaagatgttcaaaactat
atcttgaaagaggtacaaaaagtttatcgtctacaagggattgaaatttcagataaatat
attgaaattattgttaaacaaatgttgaataaagttaaaattattgattcaggagaaact
gaattacttccaggagaagttatctcatcaagagcattcagaaatgaagttaaaaatgct
attgttgcaggtaaaaaaccacctcttgcaaaacacgtaatctttggtattaaaaaagca
ccacttgaatcagattcatgattgtctagtgcatcattccaagatacagcaagagttctt
gttaaagctgttatcaaaggaaaagttgataaacttgaaggattaaaagaaaacattatg
ttaggaaatttaattcctgcaggaactggattaactggtagtgcagatattatcaaaaaa
ggtaaggaaacttacaattcagaatattag
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integrated database retrieval system