KEGG   Sinocyclocheilus grahami: 107557877Help
Entry
107557877         CDS       T04918                                 

Definition
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sgh  Sinocyclocheilus grahami
Pathway
sgh03030  DNA replication
sgh03410  Base excision repair
sgh03420  Nucleotide excision repair
sgh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sgh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107557877
   03410 Base excision repair
    107557877
   03420 Nucleotide excision repair
    107557877
   03430 Mismatch repair
    107557877
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sgh03032]
    107557877
   03400 DNA repair and recombination proteins [BR:sgh03400]
    107557877
Enzymes [BR:sgh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107557877
    6.5.1.6  DNA ligase (ATP or NAD+)
     107557877
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     107557877
DNA replication proteins [BR:sgh03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    107557877
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     107557877
DNA repair and recombination proteins [BR:sgh03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     107557877
   NER (nucleotide excision repair)
    Other NER factors
     107557877
   MMR (mismatch exicision repair)
    Other MMR factors
     107557877
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 107557877
NCBI-ProteinID: XP_016096937
LinkDB All DBs
Position
Unknown
AA seq 995 aa AA seqDB search
MQRSIASFFQPMKSKEKSDGHVKAKAEPVKSPLKIQNGMQENDSPVKKVHKRSRAIIDSD
DEDQPIVKEQVPKQSEVQTAKPEKVRLEXSXTSTITTCQIAKAASTVSPKTPITPTTPVT
SSTSVAVVTPASSGTPGTPATPTSTSPSGIPKRKTARKHFPKRKLESRSDGEGTKEEENE
VDGAQESKRARVESSPGKTDNEMMEVEEKRADGKTAVEEQKGEDKAKSAVVEDDANNEMK
EKDKSDIKQEKKINGENGKKEKKGKQEKEDSSPKRVVKKEKNTEEGSAKKKPISSFFAPR
KAAVKLEKEEQVEGEKKKNGEISDAAEQKEKESEKGMDSAVQSQYDPSRAHYNPVDHACW
QKGQKVPYLAVARTFEKIEEDSGRLKNIETLSNFLRSVILLSPDDLLCCVYLCLNQLGPA
YQGLELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFAPANLTA
GGVFNKLKEIANMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLS
ALSQAVCLSPPGQELPPAVLDAGKRMSAENKRVWMEEKALILKQTYCEMPNYDAIIPVLL
KEGIDELPNHCKLTPGVPLRPMLAHPTKGIGEVMKRFDEASFTCEYKYDGERAQIHILEN
GEVRIFSRNQEDNTSKYPDIISRIPQVKKENVRSCVLDSEAVAWDREKKQIQPFQVLTTR
KRKDVDASEIKVQVCVYAFDLLYLNGESLVREPLSKRRALLRESFEEKVGEFVFARALDA
DNTEAIAEFLEQSVRDSCEGLMVKTLEKHATYEIAKRSHNWLKLKKDYLEGVGDTVDLCV
IGAYLGKGKRAGSYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPR
PYYRVDQSAEPDVWLEAVQVWEVKCADLSLSPVYKAAMGLVDPEKGISLRFPRYLRIRDD
KKPEDATTGSQIADLYKKQQQIQNQGEKQDLEDYY
NT seq 2988 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgaagcatagcatctttctttcagccaatgaaaagcaaggaaaagagtgatgga
catgtcaaagcaaaagccgaacctgtaaaaagtcccctcaaaattcagaatggcatgcag
gaaaatgattcacctgtgaagaaggttcataaacgcagtcgagcaatcatagacagcgat
gatgaagatcagccaatagtaaaagagcaggtgccaaaacagagtgaagttcaaacagca
aagccagagaaggtaagacttgagtaatcatgaacatcaaccataacaacatgtcagatt
gcaaaggctgcttccactgtatctccaaaaactcccataaccccaacgactcctgtcacg
tcgagtacctctgttgccgtggtaacccctgcttcctcaggtactccaggaactccagca
actccgacatcaacatcgccatcaggcattcccaaacgcaagactgcccgcaagcatttc
cccaagaggaagctggaaagcagaagtgatggagaggggacaaaagaggaggagaatgaa
gtcgatggagcgcaggaaagtaagagagcacgagtagagtcttcacctggaaaaacagac
aacgagatgatggaggtggaagagaagagagcagatgggaagactgctgtggaggaacag
aaaggggaggataaagcaaaatcagccgtagttgaggacgatgcaaacaatgagatgaaa
gaaaaggataaaagtgacataaaacaggagaaaaagataaatggagaaaatgggaagaaa
gaaaaaaaaggcaaacaagagaaggaagatagcagtcctaaacgagtggttaaaaaagaa
aaaaacacagaagagggatcggccaaaaagaaacctatcagcagcttttttgctcccaga
aaggcagctgtaaaactggaaaaagaggagcaagttgagggagaaaaaaagaagaatggg
gagatctctgacgctgctgaacagaaagagaaggaaagtgaaaaggggatggattctgca
gtccagagccagtatgatccctccagagcacattacaatcccgttgaccacgcttgctgg
cagaagggccaaaaagtgccatatttggctgtcgctcgcacctttgagaagattgaagag
gattcgggcaggctgaagaacattgaaacgctttccaactttctgcgatctgtaattcta
ctctctcccgatgacctgctatgctgtgtgtacctgtgtctgaatcagctcggccctgca
tatcagggtctggagctgggtgttggggagaccgtcctgatgaaagccgtcgctcaagca
actgggcgacaactggacaaaatcaaggcggaggctcaggagaaaggtgacctgggattg
gttgctgaaagttcccgtagcaaccagagaatgatgtttgcaccggccaatctgacagca
gggggcgttttcaacaaactgaaagagattgctaacatgagtggaaactctgcaatgaat
aagaagattgacattattaaaggcctctttgtggcgtgtcggttttctgaagctcgatac
attgtcaggtcactggctgggaagctgcggatcggattggctgagcagagcgttctctcg
gctctcagtcaggctgtatgtctgtcgcccccgggccaagagttaccaccggctgtgctg
gatgcagggaaaagaatgagtgcagaaaacaagagagtgtggatggaagagaaagcactg
atcctgaaacagacatactgtgagatgccaaattatgatgctatcattcctgtattgctg
aaggagggcatagatgaactgcccaatcactgcaagctcaccccaggtgttcccttgcgg
cccatgttggctcacccgacaaaagggatcggtgaggtaatgaaacgttttgatgaggca
tctttcacctgcgagtacaaatacgatggagagagagcccagatccatatacttgagaat
ggagaggtgcgcatctttagccgaaaccaagaggacaacacaagcaaataccctgatatt
atttcacgaatcccacaggtgaagaaagagaacgtacggtcctgtgttctggattcagag
gcggtggcctgggacagagaaaagaaacagatccagccatttcaggtcctcaccacgagg
aagaggaaggatgtggatgcatctgagatcaaggttcaggtgtgtgtgtacgcctttgat
ctgctgtacctcaacggagagtctctggtgcgagagcctctaagcaaacgcagggctctg
ttacgggagagttttgaggaaaaagtaggagaatttgtttttgctcgagctctggacgct
gacaacacggaggccatcgctgagtttctggagcagtctgtacgagattcttgtgagggc
ctaatggtgaagacattggaaaaacatgcaacttatgagattgccaaacgctcccacaac
tggctcaagctgaagaaggactatctggagggtgttggagacacagtggatctgtgcgtg
attggtgcttatctggggaaggggaagagagcaggaagctatggaggatttctactggcc
tgctacgatgaggagaatgaggagttccagtctgtctgcaagattggaacaggcttcaaa
gatgaagatctggagcaacattacaattttttaaaggagcacatcttacctaaaccacgc
ccatattaccgtgtggaccaatcagcagagccggatgtctggctggaggcggtacaagtg
tgggaggtgaaatgcgctgacctttcactgtctccagtctacaaggcagcaatgggattg
gtggacccagagaaaggcatttcactccgtttcccacggtacctcaggattagagatgac
aaaaaaccagaggatgccaccacagggtcacagattgcagatctctacaagaagcagcag
cagattcaaaaccagggcgaaaaacaagatctggaagactactattga

DBGET integrated database retrieval system