Sinocyclocheilus grahami (golden-line barbel): 107583038
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Entry
107583038 CDS
T04918
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107583038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sgh03041
]
107583038
Enzymes [BR:
sgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107583038
Spliceosome [BR:
sgh03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107583038
Complex B
107583038
Complex C
U2 SnRNP specific factors
107583038
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
107583038
NCBI-ProteinID:
XP_016124603
UniProt:
A0A672TCP6
LinkDB
All DBs
Position
Unknown
AA seq
899 aa
AA seq
DB search
MNWNKGGPSGKRGFGFGGFSLASGKKEEPRPPQKAHSAFGASGPSGGYGTNQQLSSFYKI
GTKRANFDEENAYFEDDEEESSSTDLPYIPAENSPTRKQFQSGGGGGGGGGSDSEDDPLD
AFMAEVEDQAEKDMRKLEEKEKEKKLAKGIRDDIEEEDDQEAYFRYMAENPTAGLTQEED
EEEVDYDSDGNPIAPTTKKIIMPLPPIDHSEIDYPPFEKNFYIEHEELSSLTEAGVVELR
KKLNLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALGGRDMIGI
AKTGSGKTAAFIWPMLVHIMDQKELEQGEGPIAVIVCPTRELCQQIHSECKRFGKVYGLR
SVAVYGGGSMWEQAKALQEGVEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMG
FEYQVRSIASHIRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDVTQIVE
VLQTGQEKWGWLTRRLVEFTSAGSVLIFVTKKTNCEELATNLNQEGYSLGLLHGDMDQSE
RNKVIADFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKG
LAYTLLTTKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKAGKGKKLNIGGG
GLGYRERPGLGSESTERSSSGGSALGNYEAYKPSTGAMGDRMSALKQAFQSQYKNHFVAA
SGLPPKLTTKSSSSSGWTSAGSLSSLPSGAPEGPDRTHLSYSPSSSSSFSSMLPPPALSS
GTKMSGFSSAGSLSSVSDSYSSSSSKEGSRSDRNADDRGHRGDSHYRHSDRHSGGDRDRY
AERDRHSDRDRHSDSRNGEGSHRDREGRSERDGGERSGTHKDSFAVPDPPKRKKSRWDN
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaagggaggcccgagtggcaagcgaggctttggattcgggggattctct
cttgcgagtgggaagaaagaggaacctcgtcctccccagaaggcccactctgcatttgga
gcttcaggaccatcaggtggatatggcacgaatcagcagctttcgtctttttacaaaata
ggaacaaaacgagccaatttcgacgaggagaatgcctattttgaggatgatgaagaggag
tctagcagtacagatctgccgtatatacccgccgagaactctcccactagaaagcagttc
cagtctggaggaggaggaggaggaggcggcggctccgacagtgaggatgaccctcttgat
gcttttatggctgaggtggaggaccaagcagaaaaagacatgaggaaacttgaagaaaag
gaaaaagagaaaaagttagccaagggtatacgggatgacattgaagaggaggatgaccaa
gaagcatatttccgttacatggcggaaaacccaacagctgggctgacccaagaggaagat
gaggaagaagtggactatgacagcgatggaaaccccattgctcctacaaccaaaaagatt
atcatgccactgcccccgatagaccactcagagattgactatcctccctttgagaagaac
ttctatattgagcatgaggaactcagcagtctgactgaggccggagtggtggaactgaga
aagaaactcaatctgaaggtttcaggtgcagcccctcctaaaccagccaccagttttgcc
cattttggatttgacgagcagctcatgcaccagatccgtaaatctgagtacactcaaccc
acacccatccagtgccagggtgttccgatagctttgggtggcagagacatgattggcatt
gccaaaactggcagtggaaagactgcagctttcatttggccaatgctggtgcacatcatg
gaccagaaggagctggagcagggagagggacccattgctgtgatcgtctgccccaccaga
gagctctgtcaacagatccattctgaatgcaagcgcttcgggaaggtgtatggcctccgc
tcggtggcagtatatggaggcggcagcatgtgggaacaagccaaagctctacaggaagga
gtcgaaattgttgtctgcaccccaggtcgcctgatcgatcatgtgaagaagaaggctaca
tctctgcagcgagtgacctacctggtgtttgatgaagctgatcgcatgttcgatatgggc
tttgaataccaagtgagatccattgccagccatatcagacctgatcgacagactttgtta
ttcagtgcaacatttcggaagaaaattgaaaagctggcacgagatattttggtcgacccc
attcgtgttgtgcagggagacataggagaggctaatgaagatgtcactcaaatagtggag
gtgctgcagactgggcaggaaaagtggggttggctgacacgcagactggttgagttcacc
tcagctggctctgtgctgatctttgtcactaaaaagactaactgtgaggagctggctaca
aatctcaatcaggaaggttatagcctagggctgctgcatggagacatggatcagagcgag
aggaacaaagtcatcgctgactttaagaagaagaatctgcccgtattagtagctactgat
gttgccgctcgtgggttggatattccatctatccgtacagttgtgaactacgatgtagca
cgagacattgacacacatacacatcgaattggtagaacaggtcgtgcaggagagaagggt
ttagcttacactctgctcaccactaaagacacttcatttgctggtgacctggttcgaaat
ttagagggagccaatcagagtgtttcaaaggagctgatggacctggcaatgcagaatccc
tggttcaggaagtcccgctttaaggcagggaaagggaagaagctaaatattggaggtgga
ggcctgggttacagagagagaccaggccttggatctgaatccactgagcgcagtagtagt
ggtggttctgctcttggtaactatgaagcctacaaaccatcaactggggccatgggagac
cgcatgtctgccctgaagcaagcatttcagtctcagtataaaaaccactttgtggcagca
tctggtcttcctccaaaactcacaacaaagtccagcagctcctccgggtggaccagtgca
ggaagtctaagttctttgccttcaggagcaccagaggggcctgacagaacccacctgtcc
tactctccatcgtcctcttcctcgttttcctccatgctgccgccccctgccctcagctcg
ggcaccaaaatgagcggcttcagcagtgcaggctccctgagctcagtttcagactcttac
tctagctcttcttcaaaagaggggtcccgtagcgataggaatgctgacgacaggggccat
cgtggagatagtcattatcgtcacagtgacaggcatagtggtggagaccgtgatcgctat
gcagaaagggaccggcatagtgacagagatcgtcacagcgatagccgaaacggtgaaggg
agccatagggacagagagggacggtcagaaagagatgggggtgagaggtcagggactcat
aaagacagctttgcagttcctgatccccccaaacgtaagaaaagcagatgggacaattaa
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