KEGG   Sinocyclocheilus grahami: 107584872Help
Entry
107584872         CDS       T04918                                 

Definition
(RefSeq) histone deacetylase 6-like isoform X1
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
sgh  Sinocyclocheilus grahami
Brite
KEGG Orthology (KO) [BR:sgh00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatase and associated proteins [BR:sgh01009]
    107584872
  09182 Protein families: genetic information processing
   03019 Messenger RNA Biogenesis [BR:sgh03019]
    107584872
   04131 Membrane trafficking [BR:sgh04131]
    107584872
   03036 Chromosome and associated proteins [BR:sgh03036]
    107584872
Enzymes [BR:sgh01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     107584872
Protein phosphatases and associated proteins [BR:sgh01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     107584872
Messenger RNA biogenesis [BR:sgh03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     107584872
Membrane trafficking [BR:sgh04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    107584872
Chromosome and associated proteins [BR:sgh03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     107584872
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP
Motif
Other DBs
NCBI-GeneID: 107584872
NCBI-ProteinID: XP_016127120
LinkDB All DBs
Position
Unknown
AA seq 1090 aa AA seqDB search
MDPVPESKGSTRSPRGTSETKSENNPNQKKNLQEARRKGRMDRSKEEEEMSNELKNLDVR
GKTKATGTGLVYVDAFTRFHCLWDASHPECPARVSAVMEMLETEGLLGRCVQVEARAVSE
DELLLVHTKAYVELMKSTQKMTEEELKTLAHKYDSVYLHPEFFASACLAVGSVLQLVDKV
MTSQLRNGFSINRPPGHHAHADKMNGYCMFNNLAIAARYAQKQHGVKRVLIVDWDVHHGQ
GIQYIFEEDPSVLYFSVHRYEDGSFWPHLKESDSSSVGSGAGQGYNINLPWNKIGMEDGD
YITAFQQLLLPVAYEFQPQLVLVAAGFDSVIGDPKGEMRVSPKCFSILTHMLKGVAQGRL
VLALEGGYNLQSTAEGVCASVRSLLGDPCPHLTSPGAPSESALKSISESVSALYPFWKSL
QTFEGGPLSDVTPLPAPVCAEVKVSSPITGLVYDQRMMLHHNMWDGHHPELPQRISRIFC
RHEELGLLSRCLQIPARLATEEELALCHSSEHISTIKSTEHMKPRDLHRLGNDYNSIYIC
NESYTCALMAAGSCFNSVQAIITGHVRNGVAIVRPPGHHAEKDTACGFCFFNTAALTARY
AQSITHESLRVLILDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGTFFPSSEDANYDKVG
QGKGTGYNVNIPWNGGKMGDPEYMAAFHHIVMPIAREFAPELVLVSAGFDAARGDPLGGY
QVTPEGYAHLTHQLMSLAAGRVLVILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLPPP
KTSATVTINNVLRAHAPFWSSLRIQIPESLRLALPSPKSKGKRASAGKSKKSPRQSTQSP
GQTPQHLEESGLDELSKDLLSLNLNTSTSSNPSPASVPIGGARRKVKPNPQRDSAGRESD
SPLKLKSEKARVGDGTHAEITAVKAETPDRTIPESVVSGKSAAVDDQESSVLEAAGGHTT
MMSVLESVFGAQATDLDTMYVVDPLSWCPHLESVRPVPAGGIDVFLPCEECGGDTENWIC
LFCYKVLCGRYVKQHMVTHGQVSGHPMVLSFADLSVWCYACESYVHNKVLHEAKSAAHLV
KFGEEIPPFS
NT seq 3273 nt NT seq  +upstreamnt  +downstreamnt
atggatcccgttccagaatccaaaggttctactcgatcaccgagaggaacatctgaaacc
aaaagcgaaaacaatccgaaccagaagaagaatctacaggaggcgcggaggaagggcaga
atggatcggagcaaagaggaggaggagatgagcaatgaactcaaaaacttggatgttcgt
ggtaagactaaagcaacaggaacaggtctcgtctacgtagatgcctttactcgctttcac
tgcctctgggatgccagtcacccggagtgtccagcaagagtgagcgctgtgatggagatg
ctggagacggaaggtctgctgggacgctgcgtacaagtagaggccagagctgtgtcagaa
gatgagctgttactcgttcacacgaaggcgtatgtagagctgatgaaatccacacagaaa
atgacagaggaggagctgaaaactttggctcataaatatgattctgtctacctgcatcct
gaatttttcgcctccgcctgtctggcggtgggatcagttctccagctggtggataaagtg
atgacatcacagctgcgtaacggcttctccatcaacaggcctcctggtcaccacgctcat
gcagataagatgaatggctactgtatgtttaataatctggccatagcagcgcgctacgca
cagaagcagcatggagttaaacgagttctgattgtggattgggatgtgcatcacggacag
ggaatccagtatatttttgaagaggatcccagtgtgctgtatttctcagtgcacagatat
gaagacggctcgttctggccgcatctcaaggagtctgacagcagttcggtgggttcagga
gcaggacagggctacaatatcaacctgccctggaacaagatagggatggaggatggagat
tacatcacagctttccagcagctcctgcttccagtggcgtatgagtttcagcctcagctg
gtgttagtggcggccggctttgactctgtgattggtgacccaaagggtgagatgcgagtg
agtccaaagtgtttctccatcctgacccacatgctgaaaggtgtagcacagggtcgactc
gtgctggctcttgagggtggatataacctccagtccacagcagagggtgtttgtgctagt
gtgaggtcactgctgggtgacccttgccctcatctgacctctcctggcgctccgagtgaa
agtgctctgaagtccatctcagagtccgtctcagccttgtatccattttggaagagtctt
cagacttttgagggtggtcctctgtctgatgtcactcccctgcccgctccagtgtgtgca
gaagtgaaggtttcctctccgatcactgggctggtttacgaccagagaatgatgcttcat
cacaacatgtgggatggtcatcatccagagctccctcagagaatttctcgcatcttttgc
cggcatgaggagttgggtctgctgtcccgttgccttcagataccagctcgcctagcaaca
gaagaagagctggcactctgtcacagttctgagcatataagcactataaagagtacagag
cacatgaaacccagagatctgcaccgtctgggaaacgattacaactccatctacatctgt
aatgagagctacacctgcgccctgatggccgctgggtcgtgttttaactctgtacaggcc
ataatcacaggccacgtgagaaatggcgtggccatagtccgtcctcctggtcatcatgca
gagaaagacacagcttgtggtttctgtttctttaatacggctgctttgaccgcacgctat
gcccagagcatcactcacgaatccctgcgtgtcctcatcctggattgggatgttcaccat
ggaaacggcacacagcacatctttgaggaggatgacagtgttctgtacatctccctgcat
cgctacgaagacgggacattcttccccagttcagaggatgctaactatgataaggtgggg
cagggcaagggcacaggatacaatgtcaacatcccctggaatggaggaaagatgggagac
ccagaatacatggcggctttccatcacatagtgatgccgatagccagagagtttgcccca
gagctggtgctggtgtctgctgggtttgatgcagcacgaggtgatccgttaggagggtat
caggtgaccccagagggctacgctcacctcacccatcagttaatgagcctggctgcagga
agagtgctagtcatactggagggaggatataacctcacctccatctctgagtcaatgtcc
atgtgcaccagtatgttgctgggagactctcctccatctctagaccatctgccccctccg
aagaccagtgccactgttaccattaacaatgtcttgcgtgcacatgcccccttttggagc
tccttgagaatacagattccagagtcacttcgtttggctttgccgtctcctaaatcgaaa
ggtaagcgggcatcagcgggcaagagcaagaaatctcctcgccagtccacccagagtcct
ggacagacaccgcagcatcttgaggaatccggccttgatgagctcagtaaagacctgctc
tctctgaatctcaacacaagtacctcatctaaccccagcccagcatctgtccccattgga
ggagccagacggaaggtgaaacccaacccacagagggattcagcaggccgggagtcagat
tcacccctaaaactcaagtcagagaaagccagagttggagatggcacgcatgcagagatt
acagctgtaaaagcagagacacctgaccggacaattccagagtctgtggtctctggaaag
tcagctgccgtggatgatcaggagagttcagtgctggaagctgctggtggtcacaccact
atgatgtcagtcttagaaagtgtctttggagcacaagccacggatttggacactatgtat
gtggtggacccgttgtcttggtgcccacacttggagtcagtgcgaccggttcccgcaggt
ggcatcgatgtcttcctgccgtgtgaagagtgtggaggtgatacagaaaactggatctgc
ctcttctgctacaaggtgctctgcgggcgttatgtgaagcagcacatggtgacccacggg
caggtgtcgggtcaccctatggtgctgagcttcgctgacctttctgtctggtgctacgct
tgtgagtcatacgtccacaacaaggtgctccatgaagccaaaagtgccgctcaccttgtg
aagtttggagaggagattcctcctttcagctga

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