KEGG   Sinocyclocheilus grahami: 107600072Help
Entry
107600072         CDS       T04918                                 

Definition
(RefSeq) DNA ligase 1-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sgh  Sinocyclocheilus grahami
Pathway
sgh03030  DNA replication
sgh03410  Base excision repair
sgh03420  Nucleotide excision repair
sgh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sgh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107600072
   03410 Base excision repair
    107600072
   03420 Nucleotide excision repair
    107600072
   03430 Mismatch repair
    107600072
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sgh03032]
    107600072
   03400 DNA repair and recombination proteins [BR:sgh03400]
    107600072
Enzymes [BR:sgh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107600072
    6.5.1.6  DNA ligase (ATP or NAD+)
     107600072
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     107600072
DNA replication proteins [BR:sgh03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    107600072
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     107600072
DNA repair and recombination proteins [BR:sgh03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     107600072
   NER (nucleotide excision repair)
    Other NER factors
     107600072
   MMR (mismatch exicision repair)
    Other MMR factors
     107600072
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 107600072
NCBI-ProteinID: XP_016147334
LinkDB All DBs
Position
Unknown
AA seq 983 aa AA seqDB search
MQRSIASFFQPMKSKEKSDGQVKAKIEPVKSPLKIQNGVQESDSPVKKIHKRSRAIIDSD
DEDQPIVEEQVPNQREVEPVKPEKKSDVTKAASTPVSPKTPITPTTPVTSSTPASSGTPG
TPATPTSTSPSGIPKRKTARKQFPKRKLESRSDGEGAKEEGKEVDEGQECKRARVEASPG
QTDNEMMEVEEKSADGKTAVEEQKEKDEAKTTVVEDNANNKMKEKVKNKVKQEKKIHVEN
GKKEKKEDKKEKEHSSPERAVNKEKNTEEEGGSAKKKPISCFFAPRKAAVKLEKEERNER
EKKKDGEISDAAEQKEEKRLNEKGVDSAVQSQYDPSRAHYHPVDHACWRKGQKVPYLAVA
RSFEKIEEDSGRLKNIETLSNFLRSVILLSPDDLLCCVYLCLNQLGPAYQGLELGVGETV
LMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFVPANLTAGGVFNKLKEIAN
MSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLAALSQAVCLSPPG
QEFPPAVLNAGKGMSAENRRVWLEEKALILKQTYCEMPNYDAIIPVLMKEGIDELPKHCK
LTPGVPLRPMLAHPTKGVGEVMKRFDEASFTCEYKYDGERAQIHILENGEVRIFSRNQED
NTSKYPDIISRIPQVKKENVWSCVLDSEAVAWDREKKQIQAFQVLTTRKRKDVDASEIKV
QVCVYAFDLLYLNGESLVREPLSKRRALLRESFEEKEGEFVFARSLDSDNTESIAEFLEQ
SVRDSCEGLMVKTLEKHATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGAYLGKGKRAG
SYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPRPYYRVDQSAEPD
VWLEAVQVWEVKCADLSLSPVYKAAMGLVDPEKGISLRFPRYLRIRDDKKPEDATTGSQI
ADLYKKQQQIQNQGEKQDLEDYY
NT seq 2952 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgaagcatagcgtcattctttcagccaatgaaaagtaaggagaagagtgatgga
caggtcaaagcaaagattgaacctgtaaaaagtcccctcaaaattcagaatggtgtgcag
gaaagcgattcaccagtaaagaagattcataaacgcagtcgagcaatcatagacagcgat
gatgaagatcaaccgatagtagaagagcaggtgccaaaccagagggaagttgaaccagta
aagccagagaagaaatctgatgttacaaaggctgcttccactccggtttctcccaaaaca
cccataaccccgacgactccggtcacgtcgagtaccccagcttcctcaggtactccggga
actccagcaactccgacatcaacatcgccgtcaggcattcccaaacgcaagacagcccgc
aagcagttccccaagaggaagctggaaagcagaagtgatggagagggggcaaaagaggag
gggaaggaggttgacgaagggcaggagtgtaagagagcacgagttgaggcctcacctgga
cagacagacaacgagatgatggaggtggaagagaagagcgcagatgggaagactgcagtg
gaggaacagaaagagaaggatgaagcaaaaacaaccgtagttgaggacaatgcaaacaat
aagatgaaagaaaaggttaaaaataaggtaaaacaggagaaaaagatacatgtagaaaat
gggaagaaagaaaaaaaagaagacaagaaagagaaggaacatagcagtcctgaacgagcg
gttaataaagaaaaaaacacagaggaggaagggggatcggccaaaaagaaacccatcagc
tgcttttttgctcccagaaaggcagctgtcaaactggaaaaagaggagcgaaatgagaga
gaaaaaaagaaggatggggagatctctgatgctgctgaacagaaagaggagaaaaggttg
aatgaaaagggggtggattctgcagtccagagccagtatgatccctccagagcacattac
catcccgttgaccacgcctgctggaggaagggccaaaaagtgccatatttggctgtcgct
cgcagttttgagaagattgaagaggattcgggcaggctgaagaacattgaaacgctttcc
aactttctgcgatctgtaattctgctttctccagatgacctgttatgctgtgtgtacctg
tgtttgaatcagctcggccctgcatatcagggtctggagctgggcgttggggagaccgtc
ctgatgaaagctgtcgctcaagcaactgggcgacaactggacaaaatcaaggcggaggct
caggagaaaggtgacctgggattggttgctgaaagttctcgcagcaaccagagaatgatg
tttgtaccggccaatctaacagcagggggcgttttcaacaaactgaaagagattgctaac
atgagtggaaattctgccatgaataagaagattgacattattaaaggcttgtttgtggcg
tgtcggttttctgaggctcgatacattgtgcggtcactggctgggaagctgcggattgga
ttggctgagcagagcgttctcgcggctctcagtcaggctgtgtgtctgtcgcccccgggc
caagagttcccaccagctgtgctgaatgcagggaaaggaatgagtgcagaaaacaggaga
gtgtggctggaggagaaagcactgatcctaaaacagacatactgtgagatgccaaattat
gatgcaatcattcctgttttgatgaaggagggcatagatgaactgcccaaacactgcaag
ctcaccccaggtgtgcccctgcgacccatgttggctcacccgactaaaggggttggtgag
gtaatgaaacgtttcgatgaggcatctttcacctgcgagtataaatatgatggagagaga
gcccagatccatattcttgagaatggagaggtgcgcatttttagccgaaaccaagaagac
aacacaagcaaataccctgatattatttcacgaatcccacaggtgaagaaagagaacgtg
tggtcctgtgttctggattcagaggcggtggcctgggacagagaaaagaaacagatccag
gcatttcaggtcctcaccacaaggaagagaaaggatgtggatgcatctgagatcaaggtt
caggtgtgcgtgtatgcctttgatctgctgtacctcaacggagagtctctggtgcgagag
cctctaagcaaacgcagggctctgttacgagagagttttgaggagaaagaaggagagttt
gtttttgctcgatctctagactctgacaacacagagagcattgctgagttcctggagcag
tctgtacgagattcttgtgagggcctaatggtgaagacactggaaaaacatgcaacttat
gagattgccaaacgctcccacaactggctcaagctgaagaaggactatctggagggtgtt
ggagacacagtggatttgtgtgtgattggtgcttatctagggaaggggaagagagcaggc
agctatggaggatttctactggcctgctacgatgaggagaacgaggagttccagtctgtc
tgcaagattggaacaggcttcaaagatgaagatctggagcaacattacaatttcttaaag
gagcacatcttacctaaaccacgtccatattaccgtgtggaccaatcagcagagccggat
gtctggctggaggcggtgcaagtgtgggaggtgaaatgcgctgacctttcactgtctccg
gtctacaaggcagcgatgggattggtggacccagagaaaggcatttcacttcgtttccca
cggtacctcaggattagagatgacaaaaagccagaggatgccaccacagggtcacagatt
gcagatctttacaagaaacagcagcagattcaaaatcagggtgaaaaacaagatttggag
gactactattga

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