Sphingopyxis granuli: SGRAN_2751
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Entry
SGRAN_2751 CDS
T04372
Symbol
cshA2
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
sgi
Sphingopyxis granuli
Pathway
sgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SGRAN_2751 (cshA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgi03019
]
SGRAN_2751 (cshA2)
Messenger RNA biogenesis [BR:
sgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SGRAN_2751 (cshA2)
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
CMS1
Motif
Other DBs
NCBI-ProteinID:
AMG75100
UniProt:
A0AA86L4K0
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All DBs
Position
complement(2977952..2979319)
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AA seq
455 aa
AA seq
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MEFKDFGLHADIERALTAKRYTQPTPIQSQAIPVLLEGRDLCGIAQTGTGKTAAFSLPSL
DYMLSNPRPRTPRGCRMLVLSPTRELAAQIAQSCRDYGRFTKLSVATVFGGVPINRQIRD
LSQGVDILVATPGRLLDLVDQRALRLDDVEIFVLDEADQMMDMGFIHSLRRVAKILPKQR
QNLFFSATMPKEIAALAQQFLHDPVTVSVAPQATTAEKIRQRVTFVEQKEKQALLHHVLR
SEEIDRALIFTRTKHGADRVVRHLKGAGIDAFAIHGNKSQGQRTTALQAFRSGQVRLLVA
TDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGIAISFVAPDERTYLRDIE
RVTRTRAEPVALPDGFTEMVRNLPKPAQPPRNTGGKGRDPQRQREDALRKKADGAPSRGP
RREAAGEGAQPQRKRRFRPRRGGVGAHKGAVQRVG
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggaattcaaagacttcggcctccacgccgacatcgagcgtgcgctgacggccaagcgc
tatacccaaccgacgccgattcagagccaggcgatccccgtcctgctcgaagggcgcgac
ctgtgcggtatcgcgcagaccggcaccggcaagaccgcggccttctcgctgccttcgctc
gactatatgctgtcgaacccgcgcccgcgcactccgcgcggttgccgcatgctcgtcctg
tcgccgacccgcgaactggcggcgcagatcgcgcagagctgccgcgactacggccgtttc
accaagctcagtgttgcgacggtgttcggcggcgtgccgatcaatcgccagattcgcgac
ctgtcgcagggcgtcgacatcctcgtcgcgacgccgggccggctgctcgacctggtcgac
cagcgcgcgctgcgcctcgacgacgttgaaatcttcgtcctcgacgaggccgatcagatg
atggacatgggcttcatccattcgctgcgtcgcgtcgccaagatcctgccgaagcagcgc
cagaatctcttcttctcggcaacgatgccgaaggagatcgcggcgctcgcgcagcagttc
ctgcacgaccccgtcaccgtctcggtggcgccgcaggcgacgaccgcggaaaagatccgc
cagcgcgtcaccttcgtcgagcagaaggagaagcaggcgctgcttcatcatgtcctgcgc
agcgaggagatcgaccgcgcgctgatcttcacgcgcaccaagcatggcgccgaccgtgtc
gttcgccatctgaaaggcgcggggatcgatgcctttgcgatccacggcaacaagagccag
ggacagcgcaccacggcgcttcaggccttccgttcggggcaggtgcggctgctcgtcgcg
accgacatcgcggcgcgcggcatcgacgtgtccggagtcagccacgtcatcaacttcgag
attccgaacgtccccgaacaatatgtccaccggatcggccgcaccgcgcgcgccggggcg
gagggcatcgcgatcagcttcgtcgcgcccgacgagcgcacctatctgcgtgacatcgaa
cgcgtgacgcgaacccgcgccgagccggttgcgctgcccgacggttttacggagatggtc
cgcaacctgcccaagcccgcccagccgccgcgcaataccggcggcaagggccgcgatccg
cagcgccagcgcgaagatgcgctgcgcaagaaggcggacggcgccccgtcgcgcggtccg
cgccgcgaagcggcgggcgagggcgcacagccccagcgcaagcgccgtttccggccgcgt
cgcggcggcgtcggcgcgcacaagggcgcggtccagcgcgtcggctga
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