Sphingopyxis granuli: SGRAN_3920
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Entry
SGRAN_3920 CDS
T04372
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sgi
Sphingopyxis granuli
Brite
KEGG Orthology (KO) [BR:
sgi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgi03016
]
SGRAN_3920
Enzymes [BR:
sgi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SGRAN_3920
Transfer RNA biogenesis [BR:
sgi03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SGRAN_3920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AMG76250
UniProt:
A0AA86GS96
LinkDB
All DBs
Position
4292598..4293110
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AA seq
170 aa
AA seq
DB search
MRARNPLYVMAKPPPEVQAQIAALPRNDPSRGPHLLHVTLISLYDLHYAPPDWLPATVAA
LDSFVAPPFPLRFDRIENRKAVTLRTRDPLAGARAFQKALVNHMLAAKAPIMDGTTPEPH
VTINYRGDRLGAQTIAPIGWTVDEIILTESIVGKTTHVERGRWPLRSDAG
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcccggaaccccctctacgtcatggcgaagccgccgccggaggtgcaggcgcag
atcgccgcgttgccgcgcaacgatccttcgcgcggcccccaccttctccatgtcacgctc
atctcgctctacgacctgcattatgcgccgcccgactggctgcccgcgaccgtcgccgcg
ctggacagcttcgtcgcaccgcccttcccgctccgcttcgaccggatcgagaaccgcaag
gcggtgacgctgcggacgcgcgatccgctggccggggcgcgggcgttccagaaggcgctg
gtcaaccatatgctggccgcgaaggcgccgatcatggacggcaccacgcccgaaccgcac
gtcacgatcaactatcgcggcgaccggctgggcgcgcagacgatcgcgccgatcggctgg
acggtcgacgagatcatcctgaccgaaagcatcgtcggcaagaccacccatgtcgaacgc
ggccgctggccgctccgctccgacgcgggctga
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